Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30240
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g04970.1 68417.m00722 callose synthase, putative / 1,3-beta-g... 29 2.5
At5g66160.2 68418.m08334 protease-associated zinc finger (C3HC4-... 28 3.2
At5g66160.1 68418.m08335 protease-associated zinc finger (C3HC4-... 28 3.2
At1g53100.1 68414.m06013 glycosyltransferase family 14 protein /... 28 3.2
At3g03690.1 68416.m00372 glycosyltransferase family 14 protein /... 27 5.7
At3g53810.1 68416.m05945 lectin protein kinase, putative similar... 27 7.5
At3g15350.2 68416.m01938 glycosyltransferase family 14 protein /... 27 7.5
At3g15350.1 68416.m01937 glycosyltransferase family 14 protein /... 27 7.5
At3g17780.1 68416.m02268 expressed protein 27 9.9
>At4g04970.1 68417.m00722 callose synthase, putative /
1,3-beta-glucan synthase, putative similar to callose
synthase 1 catalytic subunit GI:13649388 from
[Arabidopsis thaliana]
Length = 1768
Score = 28.7 bits (61), Expect = 2.5
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Frame = +1
Query: 139 WTFIAGYLYFEIALVMLMILPIFSPRRWNQFFKSRLFS--------MFRENVAVYFYVFI 294
W FI L F +A+ ++ +F R W+Q K ++S F + V VY +
Sbjct: 372 WLFIRLTLKFVVAVAWTVLFSVFYARIWSQKNKDGVWSRAANERVVTFLKVVFVYVIPEL 431
Query: 295 GVLALFLIDAVR 330
L LF++ +R
Sbjct: 432 LALVLFIVPCIR 443
>At5g66160.2 68418.m08334 protease-associated zinc finger
(C3HC4-type RING finger) family protein contains Pfam
domain, PF02225: protease-associated (PA) domain and
Pfam domain, PF00097: Zinc finger, C3HC4 type (RING
finger); similar to ReMembR-H2 protein JR702
[Arabidopsis thaliana] gi|6942149|gb|AAF32326; identical
to cDNA ReMembR-H2 protein JR700 mRNA, complete cds
GI:6942146
Length = 290
Score = 28.3 bits (60), Expect = 3.2
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +1
Query: 139 WTFIAGYLYFEIALVMLMILPIFSPRRWNQF 231
WT +A + + +V +++ F+PR W Q+
Sbjct: 167 WTVLAISFFSLLLIVTFLLIAFFAPRHWTQW 197
>At5g66160.1 68418.m08335 protease-associated zinc finger
(C3HC4-type RING finger) family protein contains Pfam
domain, PF02225: protease-associated (PA) domain and
Pfam domain, PF00097: Zinc finger, C3HC4 type (RING
finger); similar to ReMembR-H2 protein JR702
[Arabidopsis thaliana] gi|6942149|gb|AAF32326; identical
to cDNA ReMembR-H2 protein JR700 mRNA, complete cds
GI:6942146
Length = 310
Score = 28.3 bits (60), Expect = 3.2
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +1
Query: 139 WTFIAGYLYFEIALVMLMILPIFSPRRWNQF 231
WT +A + + +V +++ F+PR W Q+
Sbjct: 167 WTVLAISFFSLLLIVTFLLIAFFAPRHWTQW 197
>At1g53100.1 68414.m06013 glycosyltransferase family 14 protein /
core-2/I-branching enzyme family protein contains Pfam
profile: PF02485 Core-2/I-Branching enzyme
Length = 406
Score = 28.3 bits (60), Expect = 3.2
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 408 ISSPKKLLYYRLCNFPDIRNT*TNHNVDY 494
+SSP+ + +CN P+ T NH++ Y
Sbjct: 273 VSSPEGYFHTVICNVPEFSKTAVNHDLHY 301
>At3g03690.1 68416.m00372 glycosyltransferase family 14 protein /
core-2/I-branching enzyme family protein contains Pfam
profile: PF02485 Core-2/I-Branching enzyme
Length = 378
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 408 ISSPKKLLYYRLCNFPDIRNT*TNHNVDY 494
+SSP+ +CN + +NT NH++ Y
Sbjct: 262 VSSPEGYFQTLICNSDEFKNTTVNHDLHY 290
>At3g53810.1 68416.m05945 lectin protein kinase, putative similar to
receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733; contains protein kinase domain,
Pfam:PF00069; contains legume lectins alpha and beta
domains, Pfam:PF00138 and Pfam:PF00139
Length = 677
Score = 27.1 bits (57), Expect = 7.5
Identities = 25/99 (25%), Positives = 43/99 (43%)
Frame = +1
Query: 133 IQWTFIAGYLYFEIALVMLMILPIFSPRRWNQFFKSRLFSMFRENVAVYFYVFIGVLALF 312
+ W+F ++L L LP F PRR ++F+K M ++++ F + LA +
Sbjct: 257 VGWSFRLNGEAPMLSLSKLPKLPRFEPRRISEFYK---IGMPLISLSLIFSIIF--LAFY 311
Query: 313 LIDAVREIRKYSNVTDVSHTHLATEMKTHVKLFRAQRNF 429
+ VR +KY D T +L+ A + F
Sbjct: 312 I---VRRKKKYEEELDDWETEFGKNRFRFKELYHATKGF 347
>At3g15350.2 68416.m01938 glycosyltransferase family 14 protein /
core-2/I-branching enzyme family protein contains Pfam
profile: PF02485 Core-2/I-Branching enzyme
Length = 424
Score = 27.1 bits (57), Expect = 7.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 408 ISSPKKLLYYRLCNFPDIRNT*TNHNVDY 494
+SSP+ +CN P+ T NH++ Y
Sbjct: 290 VSSPEGYFQTVICNVPEFAKTAVNHDLHY 318
>At3g15350.1 68416.m01937 glycosyltransferase family 14 protein /
core-2/I-branching enzyme family protein contains Pfam
profile: PF02485 Core-2/I-Branching enzyme
Length = 424
Score = 27.1 bits (57), Expect = 7.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 408 ISSPKKLLYYRLCNFPDIRNT*TNHNVDY 494
+SSP+ +CN P+ T NH++ Y
Sbjct: 290 VSSPEGYFQTVICNVPEFAKTAVNHDLHY 318
>At3g17780.1 68416.m02268 expressed protein
Length = 129
Score = 26.6 bits (56), Expect = 9.9
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 3/120 (2%)
Frame = +1
Query: 127 MSIQWTFIAGYLYFEIALVMLMILPIFSPRRWNQFFKSRLFSMFR--ENVAVYFYVFIGV 300
M++QW ++ + E+A+ +++ LP + K R+ S+ N A F G
Sbjct: 1 MALQWLILSYVVAAEVAIAVILTLP------YPMLLKKRIVSLISLILNPAASIVAFAG- 53
Query: 301 LALFLIDAVREIRKYSNVTDVSHTHLATEMKTHVK-LFRAQRNFYIIGFAIFLTFVIRRL 477
L I E R + S TE H K +++AQRN + I L + I R+
Sbjct: 54 FQLLDIYWKNEHRLLCS----SEVCTTTERDRHEKSVYKAQRNGVLCAAGILLYWCIFRI 109
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,043,766
Number of Sequences: 28952
Number of extensions: 192023
Number of successful extensions: 418
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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