Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30238
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57277| Best HMM Match : Phage_T7_Capsid (HMM E-Value=6.7)          101   4e-22
SB_8675| Best HMM Match : Aminotran_1_2 (HMM E-Value=0)                85   3e-17
SB_51759| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   4e-07
SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45)           29   2.3  
SB_41487| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0)                  28   4.0  
SB_2438| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.0  
SB_23855| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_14793| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06)                 28   5.3  
SB_33521| Best HMM Match : Utp14 (HMM E-Value=0.48)                    28   5.3  
SB_55753| Best HMM Match : CbiQ (HMM E-Value=1.7)                      27   9.2  
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_48446| Best HMM Match : Pkinase (HMM E-Value=1.2e-05)               27   9.2  
SB_30783| Best HMM Match : RasGAP (HMM E-Value=3.2e-34)                27   9.2  

>SB_57277| Best HMM Match : Phage_T7_Capsid (HMM E-Value=6.7)
          Length = 130

 Score =  101 bits (242), Expect = 4e-22
 Identities = 43/64 (67%), Positives = 55/64 (85%)
 Frame = +2

Query: 119 GCTGLRASSTWWNNVQMGPPDVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVR 298
           G   +R SS WW++V+ GPPD ILG+TEA+K+DT+PKK+NLGVGAYRDD GKP+VLPSV+
Sbjct: 42  GYAAVRLSS-WWSHVEAGPPDAILGVTEAFKRDTNPKKMNLGVGAYRDDTGKPYVLPSVK 100

Query: 299 KAEE 310
           KA +
Sbjct: 101 KASD 104


>SB_8675| Best HMM Match : Aminotran_1_2 (HMM E-Value=0)
          Length = 512

 Score = 85.0 bits (201), Expect = 3e-17
 Identities = 45/99 (45%), Positives = 59/99 (59%), Gaps = 5/99 (5%)
 Frame = +2

Query: 137 ASSTWWNNVQMGPPDVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEIL 316
           AS+  + +V + P D +  +   Y KD  P K+NLGVGAYRD++GKP+VLP V K E  L
Sbjct: 2   ASTNLFKDVPLVPTDHVFHVMACYNKDKDPSKINLGVGAYRDNDGKPWVLPVVSKVETQL 61

Query: 317 HSRG-----LNHEYAPISGEATYTDAVAKLAFGEDSPVI 418
            ++G     LNHEY  I G   ++DA  KL  G D P I
Sbjct: 62  -AQGIADGTLNHEYLGIDGLRQFSDAACKLLLGGDHPAI 99



 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 40/88 (45%), Positives = 55/88 (62%), Gaps = 5/88 (5%)
 Frame = +2

Query: 254 YRDDEGKPFVLPSVRKAEEILHSRG-----LNHEYAPISGEATYTDAVAKLAFGEDSPVI 418
           YRD++GKP+VLP V K E  L ++G     LNHEY  I G   ++DA  KL  G D P I
Sbjct: 106 YRDNDGKPWVLPVVSKVETQL-AQGIADGTLNHEYLGIDGLRQFSDAACKLLLGGDHPAI 164

Query: 419 KNKSNCTVQTLSGTGALRLGLEFITKHY 502
                C +Q++SGTG++ LGL+F+ + Y
Sbjct: 165 AQNRVCGIQSISGTGSVFLGLKFLYQFY 192


>SB_51759| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 29/60 (48%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
 Frame = +2

Query: 254 YRDDEGKPFVLPSVRKAEEILHSRG-----LNHEYAPISGEATYTDAVAKLAFGEDSPVI 418
           YRD++GKP+VLP V K E  L ++G     LNHEY  I G   ++DA  KL  G D P I
Sbjct: 2   YRDNDGKPWVLPVVSKVETQL-AQGIADGTLNHEYLGIDGLRQFSDAACKLLLGGDHPAI 60


>SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = +2

Query: 179 DVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEILHSRGLNH 337
           DV       YK+D    + NLGV AYR     P +LP  +  +EI++++G+ +
Sbjct: 84  DVACDSYHKYKEDVQLLR-NLGVKAYRFSISWPRILP--KGTKEIINTKGIEY 133


>SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45)
          Length = 671

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 294 TEGKTNGFPSSSLYAPTPRFTFL 226
           ++ KT GF SSS   P PRF F+
Sbjct: 377 SQEKTKGFDSSSWMKPNPRFMFM 399


>SB_41487| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 10/47 (21%), Positives = 25/47 (53%)
 Frame = +3

Query: 252 HIEMMRENHLFCLLSERQKKFSIVEDSIMSMLPSVVRPHILML*LNW 392
           H++  R  H++ L  +  ++ S+ + S+   LP  + P  ++  ++W
Sbjct: 112 HLKQGRGKHVYRLFLDAMRRLSMYQRSVRLFLPRAILPMHMLTRIHW 158


>SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0)
          Length = 1498

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 19/75 (25%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
 Frame = -3

Query: 355  TDGSILMIESSTME---NFFCLSDRRQNKWFSLIISICSNTKIYFFRMCVLL--VCFCNA 191
            +D  I++    +M+   +F+ L+ R+ +++FSL  ++ +++K  + R+C  +  V    A
Sbjct: 1127 SDPDIIVFTGYSMQRVVHFYSLAQRKHSRYFSLAQALSNDSKSGYRRVCAFVHQVVRTAA 1186

Query: 190  *DYIWRTHLNIVPPG 146
              + W   L+I P G
Sbjct: 1187 LTH-WALSLDISPKG 1200


>SB_2438| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1086

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
 Frame = -3

Query: 436 TVALIFDDRAVFSKSQFSYSISICGLTTDGSILMIESSTMENF----FCLSDRRQNKWFS 269
           TV L   D  +F          +     D S+L++ + ++E F    F +  R   KWF 
Sbjct: 219 TVDLYIADEWLFGAFMCKTVTFLQNTVLDASVLILLTISIEKFTVVCFPIQSRFYRKWFR 278

Query: 268 LIISIC 251
            I+ +C
Sbjct: 279 YIVGVC 284


>SB_23855| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
 Frame = -3

Query: 436 TVALIFDDRAVFSKSQFSYSISICGLTTDGSILMIESSTMENF----FCLSDRRQNKWFS 269
           TV L   D  +F          +     D S+L++ + ++E F    F +  R   KWF 
Sbjct: 131 TVDLYIADEWLFGAFMCKTVTFLQNTVLDASVLILLTISIEKFTVVCFPIQSRFYRKWFR 190

Query: 268 LIISIC 251
            I+ +C
Sbjct: 191 YIVGVC 196


>SB_14793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 821

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 450 SVCTVQLLLFLMTGLSSPKASLATASVYVASPLM 349
           ++CTV +L+ + T L   K S+    +YV SPL+
Sbjct: 153 AICTVTILVGVFTPLIPLKISVTLFLIYVFSPLL 186


>SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 955

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 260 DDEGKPFVLPSVRKAEEILHSRGLNHEYAPISGEA 364
           D + KP     + + +E +H++ + H+YA  SGE+
Sbjct: 171 DIDQKPTANSKMDEKKEFIHAKYIKHQYAQKSGES 205


>SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06)
          Length = 863

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 447 VCTVQLLLFLMTGLSSPKASLATASVYVASPLM 349
           +CTV + L   T L   K SL   S+Y+  PL+
Sbjct: 680 ICTVTMSLGFFTPLIPGKISLTLFSIYILLPLL 712


>SB_33521| Best HMM Match : Utp14 (HMM E-Value=0.48)
          Length = 947

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
 Frame = +2

Query: 155  NNVQMGPPDVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEILHSRG-- 328
            NN Q      ++G+TE++KK  + KK N G  A             V K  +++ S    
Sbjct: 758  NNHQSDDIIKVVGVTESHKKKENKKKDNDGADA-------------VNKVIKVIESDDGH 804

Query: 329  LNHEYAPISGEATYTDAVAKLAFGEDSPVI----KNKSNCTVQTLSGTGALRLG 478
            +N E  PI+  +   + + KL    D  +      ++S   V + SG+G+   G
Sbjct: 805  VNEEEGPITNHSDDVNEIIKLVESRDGHMTITDESSESGLLVDSGSGSGSKESG 858


>SB_55753| Best HMM Match : CbiQ (HMM E-Value=1.7)
          Length = 448

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
 Frame = -1

Query: 474 RRRAPVPDSV---CTVQLLLFLMTGLSSPKASLATASVY---VASPLMGAYS*LSPLLWR 313
           RR  P+   V   CT+ LLL    GLS    + A A V    VAS ++G    LSP+  R
Sbjct: 50  RRHHPIQAQVLFLCTLPLLLLAGFGLSLGLVAAACACVVLLSVASFVIGLPGPLSPIASR 109

Query: 312 ISSAF 298
           +   F
Sbjct: 110 LFKKF 114


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = +2

Query: 251  AYRDDEGKPFVLPSVRKAEEILHSRGLNHEYAPISGEATYTDAVAK 388
            +YR + G P    S+    E+L   G     +P+    T+++A ++
Sbjct: 1715 SYRSEHGSPSTENSIDSGSEVLFPNGDIERLSPLYSPTTFSEASSR 1760


>SB_48446| Best HMM Match : Pkinase (HMM E-Value=1.2e-05)
          Length = 228

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 19/53 (35%), Positives = 30/53 (56%)
 Frame = +2

Query: 104 VDTIVGCTGLRASSTWWNNVQMGPPDVILGITEAYKKDTHPKKVNLGVGAYRD 262
           V+ +V  TG+ ASS++  +V    P+++LG  E Y K+T   K  L   A +D
Sbjct: 80  VEGVVTSTGVYASSSFTASVYWTSPELMLG--ERYGKNTDICKPKLRKLAGKD 130


>SB_30783| Best HMM Match : RasGAP (HMM E-Value=3.2e-34)
          Length = 912

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = -3

Query: 349 GSILMIESSTMENFFCLSDRRQNKWFSLIISICSNTKIYFFRMCVLLVCFCN 194
           G ++ +  S   N   L D+   +     IS     K Y++ + +  +CFCN
Sbjct: 411 GRLIEVVHSHNLNAVLLPDQLSGRRPKWEISFLGLPKFYWYNIMIYAICFCN 462


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,168,627
Number of Sequences: 59808
Number of extensions: 381537
Number of successful extensions: 963
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)