Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30238
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    24   1.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   1.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   3.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   3.3  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   7.5  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   10.0 

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 279 NGFPSSSLYAPTPRFTFLGCVSFLYASVM 193
           N  P  S Y       FLGC  FL+A+++
Sbjct: 283 NSLPKVS-YIKASEIWFLGCTIFLFAAMV 310


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 166 DGSARCNLRHYRSIQEG 216
           DG AR N+ H++ I+ G
Sbjct: 535 DGPARYNIIHFKQIEPG 551


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -3

Query: 400 SKSQFSYSISICGLTTDGSILMIESSTMENFFCLS 296
           S S  SY   IC LT    +  + + T  N F LS
Sbjct: 513 SLSDGSYFGEICLLTNARRVASVRAETYCNLFSLS 547


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -3

Query: 400 SKSQFSYSISICGLTTDGSILMIESSTMENFFCLS 296
           S S  SY   IC LT    +  + + T  N F LS
Sbjct: 481 SLSDGSYFGEICLLTNARRVASVRAETYCNLFSLS 515


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 204 ASVMPKITSGGPI 166
           ASV P++ SG P+
Sbjct: 578 ASVQPQVISGNPV 590


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 404 DSPVIKNKSNCTVQTLSGTGALRLGLEFIT 493
           D+P   N +N     L G G   LG++ +T
Sbjct: 360 DNPYPLNTTNGRKGLLKGGGGYLLGIQCLT 389


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,987
Number of Sequences: 438
Number of extensions: 3126
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)