Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30236
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    34   0.015
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    29   0.41 
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    28   0.72 
SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy...    25   5.1  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    25   6.7  
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    25   8.9  
SPBC342.04 |||adhesion regulating molecule protein homolog|Schiz...    25   8.9  
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch...    25   8.9  
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    25   8.9  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   8.9  
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ...    25   8.9  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    25   8.9  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 33.9 bits (74), Expect = 0.015
 Identities = 29/102 (28%), Positives = 50/102 (49%)
 Frame = -3

Query: 499 SASSPKASENIVASSLP*FFSATFLIIVFGFISPTVGSPSVRNMMMGSKDRISSLLEDVE 320
           S+S    S  I +SS+P  FS+     V   +S +  SPS  ++ + S    SS      
Sbjct: 554 SSSITTISSGISSSSIPSTFSS-----VSSILSSSTSSPSSTSLSISSSS-TSSTFSSAS 607

Query: 319 LAKSSDLFLIRSMAVPSAASMLVPPFASSLSMMILARAIFSG 194
            +  S +    S ++ S++++L  P  S+ S+MI + +I SG
Sbjct: 608 TSSPSSI----SSSISSSSTILSSPTPSTSSLMISSSSIISG 645


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 29.1 bits (62), Expect = 0.41
 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
 Frame = +3

Query: 60  SILSFDSDVLVTDIADADKEPPKRKYSYYDRHDVKPTLKPASKATPENIARAKIIIDRLE 239
           S+L  +++ L T++ + +K                  L+  SK   E ++ AK  I+ L+
Sbjct: 94  SVLRNENESLKTNLENQNKRFDALTTENQSLRRANSELQEQSKIASEQLSIAKDQIEALQ 153

Query: 240 ANG---GTNIDAALGTAIDLI-RNRSELFANSTSSNKDEILSLE 359
                 G  + +A     D+  R +  +FA+S+S  K+EIL  E
Sbjct: 154 NENSHLGEQVQSAHQALSDIEERKKQHMFASSSSRVKEEILVQE 197


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 28.3 bits (60), Expect = 0.72
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
 Frame = -3

Query: 385 PSVRNMMMGSKDRISSLLEDVELAKSSD----LFLIRSMAVPSAASMLVPPFASSLS 227
           P++   ++ +   ++S+L    L K+ +    L +  S + P+ AS+L PP ++SLS
Sbjct: 582 PTISQGLLAATQPVTSVLNTSPLPKTPEKDRSLNVTPSSSTPTPASVLAPPSSASLS 638


>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 138 NTFVSVVPYRHLLCQSPKH 82
           N + SV PY  +  QSPKH
Sbjct: 50  NIYTSVDPYLRMRMQSPKH 68


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/25 (40%), Positives = 20/25 (80%)
 Frame = -1

Query: 189 LSMPALASVSHRDDRSTNTFVSVVP 115
           LS P+L+S+++ ++ S+NT  +V+P
Sbjct: 64  LSKPSLSSINNSNNSSSNTGGNVLP 88


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +3

Query: 279 AIDLIRNRSELFAN-STSSNKDEILSLEPIIIFLTDGDPTVGEMNPKTIIKNV 434
           A D  +  S L  +   S  K   L    +++  T    TVG+  P  +IKNV
Sbjct: 159 AFDYCKTVSSLLNDLDNSKTKLSFLPSATVMVIATTATTTVGKPLPDEMIKNV 211


>SPBC342.04 |||adhesion regulating molecule protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 291

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 189 ATPENIARAKIIIDRLEANGGTNIDAALGTAIDLIRNRSE 308
           ++P+     +     L + GG NI +ALG ++D   N +E
Sbjct: 231 SSPQYAQALRSFSQALNSPGGVNIISALGLSLDESANPNE 270


>SPBC16D10.01c ||SPBC418.03c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -2

Query: 122 WFLIGI-CYVSHQNIRIEG*NAE 57
           W+L+G  CYV  QN++ +G  +E
Sbjct: 243 WYLLGWNCYVEAQNLQEQGNGSE 265


>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +3

Query: 69  SFDSDVLVTDIADADKEPPKRKYSYYDRHDVKP 167
           SF   +L T +     +P   +Y Y+  + +KP
Sbjct: 83  SFSDPILSTQLRTPPPQPTSIRYLYFGTYRIKP 115


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 122 WFLIGICYVSHQ 87
           W+LIG CYV+ Q
Sbjct: 587 WYLIGRCYVAQQ 598


>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
           subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 19/89 (21%), Positives = 38/89 (42%)
 Frame = +3

Query: 150 RHDVKPTLKPASKATPENIARAKIIIDRLEANGGTNIDAALGTAIDLIRNRSELFANSTS 329
           RH +K  L        ++I + K+  ++LEAN     +   G      ++  +   +S  
Sbjct: 151 RHALKEFLYGVRYGFSDDIMKRKLETEKLEANNKEEKEEKEG------KDDKDDKEDSND 204

Query: 330 SNKDEILSLEPIIIFLTDGDPTVGEMNPK 416
           +  D+ +S   +   L +  P  G++ PK
Sbjct: 205 TKNDKKISKNEVDSSLIEASPLTGQVPPK 233


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 117 EPPKRKYSYYDR 152
           EPPK+K+ YY R
Sbjct: 57  EPPKKKFGYYAR 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,130,681
Number of Sequences: 5004
Number of extensions: 43746
Number of successful extensions: 140
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)