Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30236
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0304 - 16640937-16642877 33 0.18
12_02_0126 + 13958247-13958298,13958422-13958972,13959076-13960047 32 0.24
12_02_0879 + 23960084-23961551,23961796-23962184 32 0.31
11_06_0756 + 26952196-26952264,26952760-26953206,26954009-269553... 31 0.42
03_06_0353 - 33317015-33318235,33318567-33318824,33319587-333199... 29 2.2
10_08_0302 - 16626622-16626624,16626809-16628761,16631452-16631655 29 2.9
05_01_0164 + 1134815-1134911,1135078-1135278,1135875-1136156,113... 29 2.9
04_04_0463 - 25397837-25399693,25402136-25402405 28 3.9
03_06_0053 - 31304153-31304752,31304844-31304930 28 5.1
07_01_0570 + 4228567-4228852,4229198-4229217 27 6.8
02_01_0721 - 5373449-5373603,5373912-5373981,5374473-5374620,537... 27 8.9
>10_08_0304 - 16640937-16642877
Length = 646
Score = 32.7 bits (71), Expect = 0.18
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = +3
Query: 183 SKATPENIARAKIIIDRLEANGGTNIDAALGTAIDLIRNRSELFANSTSS 332
S+ T A AK + L A GGTNI AAL A ++ +R L+ N+ S
Sbjct: 227 SRMTDAGKAHAKRAVGSLSARGGTNIGAALRKAAKVLDDR--LYRNAVES 274
>12_02_0126 + 13958247-13958298,13958422-13958972,13959076-13960047
Length = 524
Score = 32.3 bits (70), Expect = 0.24
Identities = 25/87 (28%), Positives = 43/87 (49%)
Frame = +3
Query: 222 IIDRLEANGGTNIDAALGTAIDLIRNRSELFANSTSSNKDEILSLEPIIIFLTDGDPTVG 401
I+ L ANGGT+I A L + ++ +R +F S ++N L + + T GDPT
Sbjct: 127 IVKSLIANGGTDIKAGLDLGLAVLADR--VFTESRTAN--IFLMSDGKLEGKTSGDPT-- 180
Query: 402 EMNPKTIIKNVAEKNYGSDEATIFSLA 482
++NP + +G+D + +A
Sbjct: 181 QVNPGEVSVYTFGFGHGTDHQLLTDIA 207
>12_02_0879 + 23960084-23961551,23961796-23962184
Length = 618
Score = 31.9 bits (69), Expect = 0.31
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Frame = +3
Query: 159 VKPTLKPASKATPENIARAKIIIDRLEANGGTNIDAALGTAIDLIR--NRSELFANSTSS 332
VKP +K S AT N + KI+ GT I+++ G+ + NR + F ++ +S
Sbjct: 283 VKPKVKETSTATRSNASSQKIVRTLDRKASGTTIESSNGSKVVRATKFNRDKKFRSTVAS 342
Query: 333 NKDEILSLE---PIIIFLTDGDPTVGEMNPKTIIKNVA 437
N ++ ++ P + PT + K+++ N A
Sbjct: 343 NVPKVKEIKVTSPATVMDQSSKPT-RQSKLKSLVANDA 379
>11_06_0756 +
26952196-26952264,26952760-26953206,26954009-26955358,
26955400-26955408
Length = 624
Score = 31.5 bits (68), Expect = 0.42
Identities = 21/59 (35%), Positives = 31/59 (52%)
Frame = +3
Query: 225 IDRLEANGGTNIDAALGTAIDLIRNRSELFANSTSSNKDEILSLEPIIIFLTDGDPTVG 401
IDRL+A GGT + AL A+ ++ R S+++ + I+ LTDGD T G
Sbjct: 152 IDRLQARGGTALMPALEEAVKILDERQ-------GSSRNHV----GFILLLTDGDDTTG 199
>03_06_0353 - 33317015-33318235,33318567-33318824,33319587-33319904,
33319949-33320011,33320103-33320496,33320684-33320796,
33320932-33321639,33321667-33323199,33323395-33323607,
33323718-33324700,33324890-33325423,33325694-33325820,
33326083-33326162,33327347-33327377,33327949-33328053,
33328119-33328124,33328349-33328985,33329144-33329478,
33330394-33331113
Length = 2792
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/34 (32%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
Frame = +3
Query: 372 FLTDGDPTVGEMNPK---TIIKNVAEKNYGSDEA 464
F+T+ PT+GE+NP+ +I+ + + +G D++
Sbjct: 1115 FITNKSPTLGEVNPEEATLVIETIRREEFGLDQS 1148
>10_08_0302 - 16626622-16626624,16626809-16628761,16631452-16631655
Length = 719
Score = 28.7 bits (61), Expect = 2.9
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = +3
Query: 171 LKPASKATPENIARAKIIIDRLEANGGTNIDAALGTAIDLIRNRSE 308
L P K T RA + L A+GGTNI AL A ++ +R E
Sbjct: 309 LFPLRKMTESGRQRALQRVSSLVADGGTNIADALRKAARVMEDRRE 354
>05_01_0164 +
1134815-1134911,1135078-1135278,1135875-1136156,
1136237-1136271,1136356-1136445,1137228-1137357,
1137400-1138004,1138128-1138562
Length = 624
Score = 28.7 bits (61), Expect = 2.9
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Frame = +3
Query: 114 KEPPKRKYSYYDRHDVKPTLKP-------ASKATPENIARAKIIIDRLEANGG-TNIDAA 269
KEP + +VKP+LKP A+ P N A A I D+ + GG TN+ +
Sbjct: 228 KEPTTARVPISGSTEVKPSLKPPRALPRVATMRAPTNTAVASGIPDKRSSTGGKTNMYSL 287
Query: 270 LGTAID 287
+G ++
Sbjct: 288 VGGVVN 293
>04_04_0463 - 25397837-25399693,25402136-25402405
Length = 708
Score = 28.3 bits (60), Expect = 3.9
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +3
Query: 225 IDRLEANGGTNIDAALGTAIDLIRNRSELFANSTSS 332
I+ L A+GGTNI AL A+ +I +RS + NS S
Sbjct: 341 INSLGASGGTNIADALKKAMKVIEDRS--YKNSVCS 374
>03_06_0053 - 31304153-31304752,31304844-31304930
Length = 228
Score = 27.9 bits (59), Expect = 5.1
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Frame = +3
Query: 12 GDADNPKRTKPRXXY------FSILSFDSDVLVTDIADADKEPP 125
GDA + K+ R + FS S +SDVLVT + DAD P
Sbjct: 142 GDAASAKKRYSRNEHHSPGQSFSSSSTESDVLVTGVRDADAASP 185
>07_01_0570 + 4228567-4228852,4229198-4229217
Length = 101
Score = 27.5 bits (58), Expect = 6.8
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 350 VFGAHHHIPDGWRSD 394
V+G H H DGWR D
Sbjct: 19 VYGFHRHYRDGWRGD 33
>02_01_0721 -
5373449-5373603,5373912-5373981,5374473-5374620,
5374755-5374870,5374955-5375033,5375163-5375233,
5376201-5376344,5376439-5376592,5376906-5376941,
5377145-5377226,5377315-5377408,5377993-5378062,
5378177-5378274,5378745-5378827,5379335-5379428,
5379533-5380036
Length = 665
Score = 27.1 bits (57), Expect = 8.9
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +3
Query: 384 GDPTVGEMNPKTIIKNVAEK 443
G+PTVG+ P+TI++++ K
Sbjct: 261 GEPTVGKTQPETILRHLTTK 280
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,871,322
Number of Sequences: 37544
Number of extensions: 287371
Number of successful extensions: 758
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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