Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30236
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribo... 30 1.1
AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribo... 30 1.1
AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribo... 30 1.1
AF000261-11|AAB52931.1| 268|Caenorhabditis elegans Hypothetical... 29 2.0
AC006790-13|AAF60737.2| 351|Caenorhabditis elegans Serpentine r... 29 2.0
U97015-5|AAB52344.2| 362|Caenorhabditis elegans Hypothetical pr... 29 2.6
U70855-4|AAB09163.1| 625|Caenorhabditis elegans Hypothetical pr... 29 2.6
U67951-4|AAB07572.1| 398|Caenorhabditis elegans Hypothetical pr... 29 2.6
U41538-5|AAG00012.2| 762|Caenorhabditis elegans Hypothetical pr... 29 2.6
AF047651-5|AAC02722.2| 702|Caenorhabditis elegans Germline-enha... 29 2.6
AC024791-26|AAK29889.1| 421|Caenorhabditis elegans Hypothetical... 29 2.6
AL110485-6|CAB60353.1| 193|Caenorhabditis elegans Hypothetical ... 28 4.6
Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr... 27 6.0
AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like prot... 27 6.0
Z48809-1|CAA88745.1| 1299|Caenorhabditis elegans Hypothetical pr... 27 8.0
>AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-5 protein.
Length = 2238
Score = 29.9 bits (64), Expect = 1.1
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 174 KPASKATPENIARAKIIIDRLEAN 245
+P + T ENI +AK+++D+LE N
Sbjct: 1907 QPFGRFTKENIEKAKLVLDKLEKN 1930
>AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform a protein.
Length = 2276
Score = 29.9 bits (64), Expect = 1.1
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 174 KPASKATPENIARAKIIIDRLEAN 245
+P + T ENI +AK+++D+LE N
Sbjct: 1945 QPFGRFTKENIEKAKLVLDKLEKN 1968
>AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform b protein.
Length = 2238
Score = 29.9 bits (64), Expect = 1.1
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 174 KPASKATPENIARAKIIIDRLEAN 245
+P + T ENI +AK+++D+LE N
Sbjct: 1907 QPFGRFTKENIEKAKLVLDKLEKN 1930
>AF000261-11|AAB52931.1| 268|Caenorhabditis elegans Hypothetical
protein F19B10.1 protein.
Length = 268
Score = 29.1 bits (62), Expect = 2.0
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +3
Query: 162 KPTLKPASKATPENIARAKIIIDRLEANGGT 254
KP ++P+ +PE +A K + + ++A GG+
Sbjct: 72 KPAVEPSPSCSPETVAVQKFVTEFMQAAGGS 102
>AC006790-13|AAF60737.2| 351|Caenorhabditis elegans Serpentine
receptor, class z protein5 protein.
Length = 351
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 155 VTIVVRILSFRWFLIGICYVSHQNIRIE 72
V I+ +L+F+WFL GI + +RIE
Sbjct: 314 VKIMQSLLTFKWFLFGIIRALKRKLRIE 341
>U97015-5|AAB52344.2| 362|Caenorhabditis elegans Hypothetical
protein F48C1.2 protein.
Length = 362
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +3
Query: 210 RAKIIIDRLEANGGTNIDAALGTAIDLIRNRSELFANSTSSNKDEILSLEPIIIFLTDGD 389
++K II ++ AN DAA+GT L E+ +S K+ I+S + I + +
Sbjct: 211 QSKDIIWKI-ANKWIETDAAIGTRFQLTSMSKEIITQFSSHFKNRIISASDVEILIRTDN 269
Query: 390 P 392
P
Sbjct: 270 P 270
>U70855-4|AAB09163.1| 625|Caenorhabditis elegans Hypothetical
protein K08F11.5 protein.
Length = 625
Score = 28.7 bits (61), Expect = 2.6
Identities = 27/79 (34%), Positives = 44/79 (55%)
Frame = +3
Query: 276 TAIDLIRNRSELFANSTSSNKDEILSLEPIIIFLTDGDPTVGEMNPKTIIKNVAEKNYGS 455
T + L+ N+S+ T++N D+IL PI+ T+ + V E + +T+ KNV+E Y +
Sbjct: 116 TPVILVGNKSD----GTANNTDKIL---PIMEANTEVETCV-ECSARTM-KNVSEIFYYA 166
Query: 456 DEATIFSLAFGEDADPKLL 512
+A I+ DAD K L
Sbjct: 167 QKAVIYPTRPLYDADTKQL 185
>U67951-4|AAB07572.1| 398|Caenorhabditis elegans Hypothetical
protein C47C12.4 protein.
Length = 398
Score = 28.7 bits (61), Expect = 2.6
Identities = 27/79 (34%), Positives = 44/79 (55%)
Frame = +3
Query: 276 TAIDLIRNRSELFANSTSSNKDEILSLEPIIIFLTDGDPTVGEMNPKTIIKNVAEKNYGS 455
T + L+ N+S+ T++N D+IL PI+ T+ + V E + +T+ KNV+E Y +
Sbjct: 56 TPVILVGNKSD----GTANNTDKIL---PIMEANTEVETCV-ECSARTM-KNVSEIFYYA 106
Query: 456 DEATIFSLAFGEDADPKLL 512
+A I+ DAD K L
Sbjct: 107 QKAVIYPTRPLYDADTKQL 125
>U41538-5|AAG00012.2| 762|Caenorhabditis elegans Hypothetical
protein R04E5.2 protein.
Length = 762
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +3
Query: 294 RNRSELFANSTSSNKDEILSLEPIIIFLTDGDPTVGEMNPKTIIKNVAEKN 446
++ +ELF + S + + LE +L + P G MNPK +N+ ++N
Sbjct: 534 KSAAELFCSEKKSERLSLHMLEMTEKWLLEKTPLFGNMNPKA-FENLIQRN 583
>AF047651-5|AAC02722.2| 702|Caenorhabditis elegans
Germline-enhanced at-hook proteinprotein 1 protein.
Length = 702
Score = 28.7 bits (61), Expect = 2.6
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 10/121 (8%)
Frame = +3
Query: 66 LSFDSDVLVTDIADADKEPPKRKYSYYDRHDV----------KPTLKPASKATPENIARA 215
LS D D+L+ D D PP +Y + + P KP KAT N+ R
Sbjct: 66 LSVD-DLLIVDDDDETDSPPASSSNYEPKAHIGWASFGDSCLPPPPKPVKKATDPNLPRR 124
Query: 216 KIIIDRLEANGGTNIDAALGTAIDLIRNRSELFANSTSSNKDEILSLEPIIIFLTDGDPT 395
K+ + R + N D + + + + A ++ N + ++S +PI+ LTD D
Sbjct: 125 KVYVIRSQ-----NTDKSKSPLVVNNQQVTLEKAQNSPKNPNPVVS-KPIV--LTDSDED 176
Query: 396 V 398
V
Sbjct: 177 V 177
>AC024791-26|AAK29889.1| 421|Caenorhabditis elegans Hypothetical
protein Y47G6A.27 protein.
Length = 421
Score = 28.7 bits (61), Expect = 2.6
Identities = 27/79 (34%), Positives = 44/79 (55%)
Frame = +3
Query: 276 TAIDLIRNRSELFANSTSSNKDEILSLEPIIIFLTDGDPTVGEMNPKTIIKNVAEKNYGS 455
T + L+ N+S+ T++N D+IL PI+ T+ + V E + +T+ KNV+E Y +
Sbjct: 100 TPVILVGNKSD----GTANNTDKIL---PIMEANTEVETCV-ECSARTM-KNVSEIFYYA 150
Query: 456 DEATIFSLAFGEDADPKLL 512
+A I+ DAD K L
Sbjct: 151 QKAVIYPTRPLYDADTKQL 169
>AL110485-6|CAB60353.1| 193|Caenorhabditis elegans Hypothetical
protein Y46G5A.8 protein.
Length = 193
Score = 27.9 bits (59), Expect = 4.6
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +3
Query: 204 IARAKIIIDRL-EANGGTNIDAALGTAIDLIRNRSELFANSTSSNKDEILSLEPIIIFL 377
I ++I DR E G +ID LGT DL+ N N +DE + + I+ L
Sbjct: 72 ILGSRIGFDRCTELYKGRDIDRLLGTTSDLLDNLHVEHVNLDIRRRDEEVEIHKIVTML 130
>Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical
protein T06E4.3b protein.
Length = 2514
Score = 27.5 bits (58), Expect = 6.0
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +3
Query: 243 NGGTNIDAALGTAIDLIRNRSELFANSTSSNKDEIL-SLEPIIIFLTDGDPTVGEMNPKT 419
N ++ G I+L+ S A + S D I S EP+I+FLTD + +
Sbjct: 525 NCALQLEKKTGKYINLVAEMS--LAVFSKSQTDRIANSFEPLILFLTDNLQLINDF-ITI 581
Query: 420 IIKNVAEKNYGSDEATI 470
+I + EK E TI
Sbjct: 582 LIAKLCEKQEFYSELTI 598
>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical
protein T06E4.3a protein.
Length = 2531
Score = 27.5 bits (58), Expect = 6.0
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +3
Query: 243 NGGTNIDAALGTAIDLIRNRSELFANSTSSNKDEIL-SLEPIIIFLTDGDPTVGEMNPKT 419
N ++ G I+L+ S A + S D I S EP+I+FLTD + +
Sbjct: 525 NCALQLEKKTGKYINLVAEMS--LAVFSKSQTDRIANSFEPLILFLTDNLQLINDF-ITI 581
Query: 420 IIKNVAEKNYGSDEATI 470
+I + EK E TI
Sbjct: 582 LIAKLCEKQEFYSELTI 598
>AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like protein
protein.
Length = 2514
Score = 27.5 bits (58), Expect = 6.0
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +3
Query: 243 NGGTNIDAALGTAIDLIRNRSELFANSTSSNKDEIL-SLEPIIIFLTDGDPTVGEMNPKT 419
N ++ G I+L+ S A + S D I S EP+I+FLTD + +
Sbjct: 525 NCALQLEKKTGKYINLVAEMS--LAVFSKSQTDRIANSFEPLILFLTDNLQLINDF-ITI 581
Query: 420 IIKNVAEKNYGSDEATI 470
+I + EK E TI
Sbjct: 582 LIAKLCEKQEFYSELTI 598
>Z48809-1|CAA88745.1| 1299|Caenorhabditis elegans Hypothetical protein
T01E8.3 protein.
Length = 1299
Score = 27.1 bits (57), Expect = 8.0
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -3
Query: 346 ISSLLEDVELAKSSDLFLIRSMAVPSAASMLVPPFA 239
+SSLL DV++ LIRS + AS L P FA
Sbjct: 1177 LSSLLVDVQMCSREGTQLIRSSSHFLQASRLAPVFA 1212
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,766,938
Number of Sequences: 27780
Number of extensions: 244440
Number of successful extensions: 716
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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