Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30236
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   1.9  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    21   7.5  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   10.0 
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   10.0 

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 511 KSLGSASSPKASENIVASSLP 449
           K + S   PK+SE+   SS+P
Sbjct: 348 KQMASPEPPKSSESSTGSSIP 368


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 392 RIAIRQEYDDGLQRQDF 342
           +IAI +E  DG++R +F
Sbjct: 43  KIAITEELVDGMRRGEF 59


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +2

Query: 347 PVFGAHHHIPDGWRSDC 397
           P+FG + ++P+G  + C
Sbjct: 186 PMFGWNRYVPEGNMTAC 202


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +2

Query: 347 PVFGAHHHIPDGWRSDC 397
           P+FG + ++P+G  + C
Sbjct: 62  PMFGWNRYVPEGNMTAC 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,749
Number of Sequences: 438
Number of extensions: 2891
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)