Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30236
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49665.1 68418.m06148 zinc finger (C3HC4-type RING finger) fa...    30   1.1  
At2g28470.1 68415.m03460 beta-galactosidase, putative / lactase,...    29   1.4  
At2g35940.2 68415.m04412 homeodomain-containing protein contains...    29   1.9  
At2g35940.1 68415.m04411 homeodomain-containing protein contains...    29   1.9  
At2g38160.1 68415.m04684 expressed protein                             29   2.5  
At1g72640.1 68414.m08399 expressed protein                             29   2.5  
At2g38970.1 68415.m04789 zinc finger (C3HC4-type RING finger) fa...    27   5.7  
At1g78910.1 68414.m09199 pseudouridine synthase family protein l...    27   5.7  
At5g18820.1 68418.m02236 chaperonin, putative similar to SWISS-P...    27   7.5  
At5g09720.1 68418.m01126 magnesium transporter CorA-like family ...    27   7.5  
At4g15230.1 68417.m02333 ABC transporter family protein similar ...    27   7.5  
At3g06920.1 68416.m00821 pentatricopeptide (PPR) repeat-containi...    27   7.5  
At2g37380.1 68415.m04584 expressed protein                             27   7.5  
At2g17110.1 68415.m01974 expressed protein                             27   9.9  
At2g03730.1 68415.m00333 ACT domain-containing protein (ACR5) co...    27   9.9  
At1g31260.1 68414.m03826 metal transporter, putative (ZIP10) ide...    27   9.9  

>At5g49665.1 68418.m06148 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 740

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 2/113 (1%)
 Frame = +3

Query: 159 VKPTLKPASKATPENIARAKIIIDRLEANGGTNIDAALGTAIDLIRNRSELFANSTSSNK 338
           V   L P  + T      A  ++D L    G+N   AL  A  ++ +R E   N  +S  
Sbjct: 377 VPKRLLPLKRMTEHGKRSAGAVVDGLLCGQGSNTSEALKKASRVLEDRRE--RNPVAS-- 432

Query: 339 DEILSLEPIIIFLTDGDPTVGEM--NPKTIIKNVAEKNYGSDEATIFSLAFGE 491
                    I+ LTDG   + ++  N ++ I NV    +   E  +    FGE
Sbjct: 433 ---------IVLLTDGQGQLSKVHTNQRSTITNVGSTRFAHIEIPVTEHGFGE 476


>At2g28470.1 68415.m03460 beta-galactosidase, putative / lactase,
           putative similar to Beta-galactosidase precursor
           SP:P48980 from [Lycopersicon esculentum]
          Length = 852

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +3

Query: 81  DVLVTDIADADKEPPKRKYSYYDRHDVKPTLKPASKA 191
           DV+ T +  +  EP K KY++  R+D+   +K A+KA
Sbjct: 76  DVIETYVFWSGHEPEKNKYNFEGRYDLVKFVKLAAKA 112


>At2g35940.2 68415.m04412 homeodomain-containing protein contains
           'Homeobox' domain signature, Prosite:PS00027
          Length = 680

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 120 PPKRKYSYYDRHDVKPTLKPASKATP 197
           PP+ +YS Y  H V PT + A+  TP
Sbjct: 108 PPRVQYSLYGSHQVDPTHQQAACETP 133


>At2g35940.1 68415.m04411 homeodomain-containing protein contains
           'Homeobox' domain signature, Prosite:PS00027
          Length = 680

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 120 PPKRKYSYYDRHDVKPTLKPASKATP 197
           PP+ +YS Y  H V PT + A+  TP
Sbjct: 108 PPRVQYSLYGSHQVDPTHQQAACETP 133


>At2g38160.1 68415.m04684 expressed protein
          Length = 299

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 19/61 (31%), Positives = 33/61 (54%)
 Frame = +3

Query: 156 DVKPTLKPASKATPENIARAKIIIDRLEANGGTNIDAALGTAIDLIRNRSELFANSTSSN 335
           +VKP++KP+ +ATP   +RA +   RL  +   +   ++ T+I     R+  F  S+S  
Sbjct: 138 EVKPSIKPSRQATP--TSRATLPSTRLTNSAQKSNSESITTSIK-SNTRASAFPRSSSVG 194

Query: 336 K 338
           K
Sbjct: 195 K 195


>At1g72640.1 68414.m08399 expressed protein
          Length = 330

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 312 FANSTSSNKDEILSLEPIIIFLTDGDPTVGEM 407
           F  + +  K++ L  E  ++F+TDGD  +G+M
Sbjct: 105 FETNEAEEKEDDLDGEKDVVFVTDGDSDLGQM 136


>At2g38970.1 68415.m04789 zinc finger (C3HC4-type RING finger)
           family protein very low similarity to SP|P97280
           Inter-alpha-trypsin inhibitor heavy chain H3 precursor
           {Mesocricetus auratus}; contains Pfam profiles PF00097:
           Zinc finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 692

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 171 LKPASKATPENIARAKIIIDRLEANGGTNIDAALGTAIDLIRNRSE 308
           L P +K +     RA   ++ + ANGGTNI   L   + ++ +R +
Sbjct: 301 LFPLTKMSDAGRQRALQAVNSVVANGGTNIAEGLRKGVKVMEDRRD 346


>At1g78910.1 68414.m09199 pseudouridine synthase family protein low
           similarity to SP|P23851 Ribosomal large subunit
           pseudouridine synthase C (EC 4.2.1.70) (Pseudouridylate
           synthase) (Uracil hydrolyase) {Escherichia coli};
           contains Pfam profile PF00849: RNA pseudouridylate
           synthase
          Length = 478

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +3

Query: 333 NKDEILSLEPIIIFLTDGDPTVGEMNPKTIIKNVAEKNYGSDEATIFSLAFGEDADPKLL 512
           N DEI  L+ ++ F  D    V    PK  +K     +   D     +L+FG D  P+L+
Sbjct: 170 NADEIAYLQRLVRF-KDSAIIVLNKPPKLPVKGNVPIHNSMDALAAAALSFGNDEGPRLV 228


>At5g18820.1 68418.m02236 chaperonin, putative similar to
           SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha
           subunit, chloroplast precursor (60 kDa chaperonin alpha
           subunit, CPN-60 alpha)[Pisum sativum]; contains
           Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
          Length = 575

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = -3

Query: 406 ISPTVGSPSVRNMMMGSKDRISSLLEDVELAKSSDL 299
           +S T+G P  RN+++  KD I  + + V +AKS +L
Sbjct: 59  VSITLG-PRGRNVVLAEKDTIKVINDGVTIAKSIEL 93


>At5g09720.1 68418.m01126 magnesium transporter CorA-like family
           protein (MRS2-8) contains Pfam profile PF01544:
           CorA-like Mg2+ transporter protein
          Length = 397

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = -3

Query: 421 IVFGFISPTVGSPSVRNMMMGSKDRISSLLEDVELAKSSDLFLIRSMAVPSAASM 257
           ++ G     VGS S  ++ +  KD +  LLED E    ++L+L R +A  S+ ++
Sbjct: 215 MLLGLYRVKVGSKSEYDVDLQIKDELEQLLEDDE--DMAELYLSRKLAGASSPAI 267


>At4g15230.1 68417.m02333 ABC transporter family protein similar to
            pleiotropic drug resistance like protein [Nicotiana
            tabacum] GI:20522008, PDR5-like ABC transporter
            [Spirodela polyrhiza] GI:1514643; contains Pfam profile
            PF00005: ABC transporter
          Length = 1326

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = -3

Query: 421  IVFGFISPTVGSPSVRNMMMGSKDRISSLLEDVELAKSSDLFLIR--SMAVPSAASMLVP 248
            ++ G +S   G      ++ G K R+S+ LED    K   L ++    +A P   + L  
Sbjct: 1256 VLEGLLSSQYGDVDKEILVFGEKKRVSAFLEDYFGYKHESLAVVAFVLIAYPIIVATLFA 1315

Query: 247  PFASSLS 227
             F S LS
Sbjct: 1316 FFMSKLS 1322


>At3g06920.1 68416.m00821 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 871

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 201 NIARAKIIIDRLEANGGTNIDAALGTAIDLIRN 299
           NIA A  + DR +ANGG    A     I+ + N
Sbjct: 777 NIAEAGALFDRFKANGGVPDSACYNAMIEGLSN 809


>At2g37380.1 68415.m04584 expressed protein 
          Length = 321

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 6/122 (4%)
 Frame = -3

Query: 403 SPTVGSPSVRNMMMGSKDRISSLLEDVELAKSSDLFLIRSMAVPSAASMLVPPFASSLSM 224
           S  +   S+   +  S+  I +L      + SS++   R    PS  S    PF +S + 
Sbjct: 163 SKKIKHSSITQKLKASRAYIKALFSKQACSDSSEINP-RFKIEPSKVSRKKNPFVNSENP 221

Query: 223 MILARAIFSGV------AFDAGFSVGFTS*RS*YEYFRFGGSLSASAMSVTKTSESKDRM 62
           +++ R  FSGV      A  +  S   +S  S    F FG + S    ++ ++S + D  
Sbjct: 222 LLIHRRSFSGVIQRHSQAKCSTSSSSSSSASSLSSSFSFGSNGSLDLQTLMRSSNASDNS 281

Query: 61  LK 56
           ++
Sbjct: 282 IE 283


>At2g17110.1 68415.m01974 expressed protein
          Length = 733

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +3

Query: 15  DADNPKRTKPRXXYFS-ILSFDSDVLVTDIADADKEPPKRKYSYYDRHDVKP 167
           D+D+PK+ KP+    S  L FDSD    D  D D       + + +  D  P
Sbjct: 64  DSDSPKKAKPKMDSGSGHLDFDSDSDSDDDDDIDSLHSSPLHHHLEDDDSNP 115


>At2g03730.1 68415.m00333 ACT domain-containing protein (ACR5)
           contains Pfam ACT domain PF01842
          Length = 456

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 22/107 (20%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
 Frame = +3

Query: 33  RTKPRXXYFSILSFDSDVLVTDIADADKEPPKRKYSYYDRHDVKPTLKPASKATPENIAR 212
           + +P+  + ++ +      V   A  D E P+    YY RH     +K  S+A  + + +
Sbjct: 277 KDRPKLLFDTVFTLTDMNYVVSHASIDAEGPQAYQEYYIRHTDGSPVK--SEAERQRVIK 334

Query: 213 A-KIIIDRLEANGGTNIDAALGTAIDLIRNRSELF-ANSTSSNKDEI 347
             K  I R   + G  ++      + L+ + + +F  NS +  + E+
Sbjct: 335 CLKAAIQR-RVSEGLKLELCTSDRVGLLSDVTRIFRENSLTVTRAEV 380


>At1g31260.1 68414.m03826 metal transporter, putative (ZIP10)
           identical to putative metal transporter ZIP10
           [Arabidopsis thaliana] gi|17385792|gb|AAL38436; similar
           to iron-regulated transporter 2 GB:AAD30549 GI:4836773
           from [Lycopersicon esculentum]; member of the Zinc
           (Zn2+)-Iron (Fe2+) permease (ZIP) family, PMID:11500563
          Length = 364

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
 Frame = -3

Query: 442 FSATFLIIVFGFISPTVGSPSVRNMMMGSKDRISSLLEDVELAKSSDLFLIRSMAVPSAA 263
           FSA+  + +   IS   G+ S  N    SK   S +  D   A    L  I S+ + S  
Sbjct: 8   FSASIALFLLLSISHFPGALSQSNKDCQSKSNYSCI--DKNKALDLKLLSIFSILITSLI 65

Query: 262 SMLVPPFASSL-------SMMILARAIFSGVAFDAGF 173
            + +P FA S+       S  ++ ++  SG+    GF
Sbjct: 66  GVCLPFFARSIPAFQPEKSHFLIVKSFASGIILSTGF 102


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,187,297
Number of Sequences: 28952
Number of extensions: 232149
Number of successful extensions: 681
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)