Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30235
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02850.1 68416.m00277 stelar K+ outward rectifier (SKOR) / po... 59 2e-09
At5g37500.1 68418.m04516 guard cell outward rectifying K+ channe... 54 4e-08
At2g26650.1 68415.m03197 potassium channel protein 1 (AKT1) iden... 50 9e-07
At4g32650.2 68417.m04648 inward rectifying potassium channel, pu... 39 0.002
At4g32650.1 68417.m04647 inward rectifying potassium channel, pu... 39 0.002
At2g24610.1 68415.m02940 cyclic nucleotide-regulated ion channel... 37 0.007
At4g22200.1 68417.m03209 potassium channel protein 2 (AKT2) (AKT... 36 0.021
At5g53130.1 68418.m06604 cyclic nucleotide-regulated ion channel... 35 0.028
At2g28260.1 68415.m03430 cyclic nucleotide-regulated ion channel... 32 0.20
At1g31150.1 68414.m03811 expressed protein EST gb|Z33866 comes f... 32 0.26
At5g14870.1 68418.m01744 cyclic nucleotide-regulated ion channel... 31 0.35
At4g30360.1 68417.m04314 cyclic nucleotide-regulated ion channel... 31 0.46
At3g50580.1 68416.m05532 proline-rich family protein contains pr... 31 0.46
At2g40475.1 68415.m04995 expressed protein 31 0.46
At1g01710.1 68414.m00089 acyl-CoA thioesterase family protein co... 31 0.46
At1g19780.1 68414.m02473 cyclic nucleotide-regulated ion channel... 30 0.80
At1g15990.1 68414.m01918 cyclic nucleotide-regulated ion channel... 30 0.80
At1g01340.1 68414.m00049 cyclic nucleotide-regulated ion channel... 30 0.80
At2g28690.1 68415.m03487 expressed protein 30 1.1
At1g09080.1 68414.m01013 luminal binding protein 3 (BiP-3) (BP3)... 29 1.4
At4g00510.1 68417.m00070 cyclic nucleotide-binding domain-contai... 29 1.9
At1g77460.1 68414.m09020 C2 domain-containing protein / armadill... 29 1.9
At5g04640.1 68418.m00470 MADS-box family protein SLM3 MADS-box p... 29 2.5
At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel... 29 2.5
At3g08670.1 68416.m01007 expressed protein 29 2.5
At2g19440.1 68415.m02269 glycosyl hydrolase family 17 protein si... 28 3.2
At5g42020.2 68418.m05116 luminal binding protein 2 (BiP-2) (BP2)... 28 4.3
At5g42020.1 68418.m05115 luminal binding protein 2 (BiP-2) (BP2)... 28 4.3
At5g40590.1 68418.m04926 DC1 domain-containing protein predicted... 28 4.3
At5g28540.1 68418.m03480 luminal binding protein 1 (BiP-1) (BP1)... 28 4.3
At4g33480.1 68417.m04755 expressed protein 27 5.7
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 27 5.7
At1g51915.1 68414.m05852 cryptdin protein-related contains weak ... 27 5.7
At1g08400.1 68414.m00929 chromosome structural maintenance prote... 27 5.7
At5g18220.1 68418.m02138 glycosyl hydrolase family 17 protein si... 27 7.5
At2g17740.1 68415.m02055 DC1 domain-containing protein 27 7.5
At1g64760.1 68414.m07343 glycosyl hydrolase family 17 protein si... 27 7.5
At4g29050.1 68417.m04155 lectin protein kinase family protein co... 27 9.9
At3g04010.1 68416.m00422 glycosyl hydrolase family 17 protein si... 27 9.9
At1g44120.1 68414.m05096 C2 domain-containing protein / armadill... 27 9.9
At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein ... 27 9.9
At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-rel... 27 9.9
At1g02110.1 68414.m00137 proline-rich family protein contains pr... 27 9.9
>At3g02850.1 68416.m00277 stelar K+ outward rectifier (SKOR) /
potassium channel protein identical to SKOR [Arabidopsis
thaliana] gi|3810676|emb|CAA11280; member of the 1 pore,
6 transmembrane (1P/6TM) Shaker K+ channel family,
PMID:11500563
Length = 828
Score = 59.3 bits (137), Expect = 2e-09
Identities = 29/109 (26%), Positives = 58/109 (53%)
Frame = +2
Query: 161 VRGILLFRSLDAQQMQQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFDVLVTGDDR 340
+ + LFR ++ + Q++ + E+ PGE ++ QG D Y + +GV + + D
Sbjct: 398 IEKVPLFRGCSSEFINQIVIRLHEEFFLPGEVIMEQGSVVDQLYFVCHGVLEEIGITKDG 457
Query: 341 VEKVVHTYEGSGSFGELALMYNMPRAASVRAQTAGALWAMDRHTFRRIL 487
E++V + SFGE++++ N+P+ +VR + +D+ +F IL
Sbjct: 458 SEEIVAVLQPDHSFGEISILCNIPQPYTVRVAELCRILRLDKQSFMNIL 506
>At5g37500.1 68418.m04516 guard cell outward rectifying K+ channel
(GORK) identical to guard cell outward rectifying K+
channel [Arabidopsis thaliana] gi|11414742|emb|CAC17380;
member of the 1 pore, 6 transmembrane (1P/6TM) Shaker K+
channel family, PMID:11500563
Length = 820
Score = 54.4 bits (125), Expect = 4e-08
Identities = 29/109 (26%), Positives = 57/109 (52%)
Frame = +2
Query: 161 VRGILLFRSLDAQQMQQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFDVLVTGDDR 340
++ + LF+ + + Q++ + E+ PGE + QG+ D+ Y + G+ + LVT D
Sbjct: 381 IKKVPLFKGCSTEFINQIVIRLHEEYFLPGEVITEQGNVVDHLYFVCEGLLEALVTKTDG 440
Query: 341 VEKVVHTYEGSGSFGELALMYNMPRAASVRAQTAGALWAMDRHTFRRIL 487
E+ V SFG+++++ N+ + +VR L +D+ +F IL
Sbjct: 441 SEESVTLLGPHTSFGDISIICNISQPFTVRVCELCHLLRLDKQSFSNIL 489
>At2g26650.1 68415.m03197 potassium channel protein 1 (AKT1)
identical to AKT1 [Arabidopsis thaliana]
gi|563112|gb|AAA96810; member of the 1 pore, 6
transmembrane (1P/6TM- Shaker-type) K+ channel family,
PMID:11500563
Length = 857
Score = 50.0 bits (114), Expect = 9e-07
Identities = 31/106 (29%), Positives = 51/106 (48%)
Frame = +2
Query: 170 ILLFRSLDAQQMQQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFDVLVTGDDRVEK 349
+ LFR + + Q++ M + P E VI Q + +FY++ NG D LV D E
Sbjct: 370 VYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVNGTAD-LVDVDTGTES 428
Query: 350 VVHTYEGSGSFGELALMYNMPRAASVRAQTAGALWAMDRHTFRRIL 487
+V + GE+ ++ P+ +VR + L M+R TF I+
Sbjct: 429 IVREVKAGDIIGEIGVLCYRPQLFTVRTKRLCQLLRMNRTTFLNII 474
>At4g32650.2 68417.m04648 inward rectifying potassium channel,
putative (KAT3) (AKT4) (KC1) identical to K+ inward
rectifying channel protein KC1 [Arabidopsis thaliana]
gi|4090537|gb|AAC98810; similar to (KAT1) K+ channel
[Arabidopsis thaliana] gi|1165000|emb|CAA63601;
Shaker-type channel (1P/6TM), PMID:11500563
Length = 597
Score = 38.7 bits (86), Expect = 0.002
Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Frame = +2
Query: 176 LFRSLDAQQMQQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFDVLVTGDDRVEKVV 355
LF+ + Q++ + + P +I Q + +FYVI +G D++ + V + V
Sbjct: 406 LFKGFPEGLLVQLVSQIQAEYFPPKMEIILQNEIPTDFYVIVSGGVDIIASKG--VSEQV 463
Query: 356 HTYEGSGSF-GELALMYNMPRAASVRAQTAGALWAMDRHTFRRIL 487
G GS GE+ +++N+P+ +VR + + + H F+ ++
Sbjct: 464 LAKLGPGSMAGEIGVVFNIPQPFTVRTRRLSQVIRIGHHKFKEMV 508
>At4g32650.1 68417.m04647 inward rectifying potassium channel,
putative (KAT3) (AKT4) (KC1) identical to K+ inward
rectifying channel protein KC1 [Arabidopsis thaliana]
gi|4090537|gb|AAC98810; similar to (KAT1) K+ channel
[Arabidopsis thaliana] gi|1165000|emb|CAA63601;
Shaker-type channel (1P/6TM), PMID:11500563
Length = 662
Score = 38.7 bits (86), Expect = 0.002
Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Frame = +2
Query: 176 LFRSLDAQQMQQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFDVLVTGDDRVEKVV 355
LF+ + Q++ + + P +I Q + +FYVI +G D++ + V + V
Sbjct: 406 LFKGFPEGLLVQLVSQIQAEYFPPKMEIILQNEIPTDFYVIVSGGVDIIASKG--VSEQV 463
Query: 356 HTYEGSGSF-GELALMYNMPRAASVRAQTAGALWAMDRHTFRRIL 487
G GS GE+ +++N+P+ +VR + + + H F+ ++
Sbjct: 464 LAKLGPGSMAGEIGVVFNIPQPFTVRTRRLSQVIRIGHHKFKEMV 508
>At2g24610.1 68415.m02940 cyclic nucleotide-regulated ion channel,
putative (CNGC14) similar to cyclic nucleotide and
calmodulin-regulated ion channel (GI:4581205)
[Arabidopsis thaliana]
Length = 726
Score = 37.1 bits (82), Expect = 0.007
Identities = 19/72 (26%), Positives = 31/72 (43%)
Frame = +2
Query: 125 KSDAQRARLAEAVRGILLFRSLDAQQMQQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIEN 304
+ D QR + VR + LF +D Q + + + + S G Y++R+GD I
Sbjct: 464 RRDIQRHLCLDLVRRVPLFAQMDDQLLDAICERLASSLSTQGNYIVREGDPVTEMLFIIR 523
Query: 305 GVFDVLVTGDDR 340
G + T R
Sbjct: 524 GKLESSTTNGGR 535
>At4g22200.1 68417.m03209 potassium channel protein 2 (AKT2) (AKT3)
identical to potassium channel [Arabidopsis thaliana]
gi|1100898|gb|AAA97865; Note: also identical to AKT3
[Arabidopsis thaliana] gi|1172218|gb|AAA96153, which is
a truncated version of AKT2, PMID:10852932; member of
the 1 pore, 6 transmembrane (1P/6TM- Shaker-type) K+
channel family, PMID:11500563; identical to cDNA
inward-rectifying K+ channel (AKT3) GI:1172219
Length = 802
Score = 35.5 bits (78), Expect = 0.021
Identities = 22/98 (22%), Positives = 49/98 (50%)
Frame = +2
Query: 158 AVRGILLFRSLDAQQMQQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFDVLVTGDD 337
+V + LF+ + + + ++ M + P E VI Q + D+ Y+I +G +++ + +
Sbjct: 388 SVEKVYLFKGVSREILLLLVSKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEIIDSEME 447
Query: 338 RVEKVVHTYEGSGSFGELALMYNMPRAASVRAQTAGAL 451
R E V+ T FGE+ + P++ + + ++ L
Sbjct: 448 R-ESVLGTLRCGDIFGEVGALCCRPQSYTFQTKSLSQL 484
>At5g53130.1 68418.m06604 cyclic nucleotide-regulated ion channel /
cyclic nucleotide-gated channel (CNGC1) almost identical
to cyclic nucleotide-regulated ion channel 1 pir:T51354,
GI:11357236 from [Arabidopsis thaliana]
Length = 716
Score = 35.1 bits (77), Expect = 0.028
Identities = 34/147 (23%), Positives = 61/147 (41%), Gaps = 5/147 (3%)
Frame = +2
Query: 68 ETYDPEEDDSDEGAPAVFPKSDAQRARLAEAVRGILLFRSLDAQQMQQVLDAMFEKRSEP 247
ET +E++ P + + LA +R + +F +D Q + + D +
Sbjct: 451 ETRGVDEENLLSNLPKDLRRDIKRHLCLALLMR-VPMFEKMDEQLLDALCDRLQPVLYTE 509
Query: 248 GEYVIRQGDDGDNFYVIENGVFDVLVTGDDRVEKVVHTYEGSGSF-GELALMYNM-PRAA 421
Y++R+GD D I G + T R + Y G+G F GE L + + P ++
Sbjct: 510 ESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFLNSEYLGAGDFCGEELLTWALDPHSS 569
Query: 422 S---VRAQTAGALWAMDRHTFRRILLK 493
S + +T AL ++ + LK
Sbjct: 570 SNLPISTRTVRALMEVEAFALKADDLK 596
>At2g28260.1 68415.m03430 cyclic nucleotide-regulated ion channel,
putative (CNGC15) similar to cyclic nucleotide and
calmodulin-regulated ion channel (cngc6) GI:4581207 from
[Arabidopsis thaliana]
Length = 678
Score = 32.3 bits (70), Expect = 0.20
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
Frame = +2
Query: 125 KSDAQRARLAEAVRGILLFRSLDAQQMQQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIEN 304
+ D +R + VR + LF +D + + + + + G +++R+GD + I
Sbjct: 454 RRDIKRHLCFDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIR 513
Query: 305 GVFDVLVTGDDRVEKVVHTYEGSGSF-GELALMYNM-PR 415
G D T R G G F GE L + + PR
Sbjct: 514 GHLDSYTTNGGRTGFFNSCLIGPGDFCGEELLTWALDPR 552
>At1g31150.1 68414.m03811 expressed protein EST gb|Z33866 comes from
this gene
Length = 673
Score = 31.9 bits (69), Expect = 0.26
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -3
Query: 232 FEHRIQNLLHLLRV-KRTEQQYAPDRLSETGSLCVR 128
FEH++++ LH+ R K+ +QQ D+L E +C R
Sbjct: 607 FEHQLESSLHIARAHKQEQQQQQTDKLKENLMVCQR 642
>At5g14870.1 68418.m01744 cyclic nucleotide-regulated ion channel,
putative (CNGC18) similar to cyclic nucleotide and
calmodulin-regulated ion channel (cngc6) GI:4581207 from
[Arabidopsis thaliana]
Length = 706
Score = 31.5 bits (68), Expect = 0.35
Identities = 16/72 (22%), Positives = 28/72 (38%)
Frame = +2
Query: 125 KSDAQRARLAEAVRGILLFRSLDAQQMQQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIEN 304
+ + QR VR + F +D Q + + + S G Y+ R+GD + +
Sbjct: 432 RREIQRHLCLSLVRRVPFFSQMDDQLLDAICGCLVSSLSTAGTYIFREGDPVNEMLFVIR 491
Query: 305 GVFDVLVTGDDR 340
G + T R
Sbjct: 492 GQIESSTTNGGR 503
>At4g30360.1 68417.m04314 cyclic nucleotide-regulated ion channel,
putative (CNGC17) similar to cyclic nucleotide and
calmodulin-regulated ion channel cngc5 GI:4581205 from
[Arabidopsis thaliana]
Length = 720
Score = 31.1 bits (67), Expect = 0.46
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +2
Query: 125 KSDAQRARLAEAVRGILLFRSLDAQQMQQVLDAMFEKRSEPGEYVIRQGD 274
+ D QR + VR + F +D Q + + + + G Y++R+GD
Sbjct: 464 RRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLCTEGTYLVREGD 513
>At3g50580.1 68416.m05532 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 265
Score = 31.1 bits (67), Expect = 0.46
Identities = 27/79 (34%), Positives = 33/79 (41%)
Frame = -1
Query: 483 MRRNVWRSMAHRAPAVWARTDAARGMLYIRASSPNEPEPSYVWTTFSTRSSPVTRTSKTP 304
M N S + VW T + G + SP+ P PS T ST S P K+P
Sbjct: 45 MLLNTGHSFGYGDSKVWKCT-YSNGSAPAISISPSTPIPS----TPSTPSPPPPAPKKSP 99
Query: 303 FSMT*KLSPSSPCLITYSP 247
T K SPS P L + P
Sbjct: 100 PPPTPKKSPSPPSLTPFVP 118
>At2g40475.1 68415.m04995 expressed protein
Length = 193
Score = 31.1 bits (67), Expect = 0.46
Identities = 22/79 (27%), Positives = 35/79 (44%)
Frame = -1
Query: 369 PSYVWTTFSTRSSPVTRTSKTPFSMT*KLSPSSPCLITYSPGSDLFSNIASRTCCICCAS 190
PS+ W++ S+ SS +S P + + C +Y D ++S C
Sbjct: 104 PSFSWSSASSSSSSSYSSSSPPSKVEHRPRKCYSCSRSYVKEDDEEEIVSSSPTSTLCYK 163
Query: 189 RERNSSMPRTASARRALCA 133
R +SSM S +RALC+
Sbjct: 164 RGFSSSM---GSMKRALCS 179
>At1g01710.1 68414.m00089 acyl-CoA thioesterase family protein
contains Pfam profiles: PF02551 acyl-CoA thioesterase,
PF00027 cyclic nucleotide-binding domain
Length = 427
Score = 31.1 bits (67), Expect = 0.46
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = +2
Query: 149 LAEAVRGILLFRSLDAQQMQQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFDVLVT 328
+ E + + L + L + ++++ + KR G+YV+R+ D Y I G + V+
Sbjct: 6 VVEFLGNVPLLQKLPSSSLKKIAQVVVPKRYGKGDYVVREDQTWDGCYFILQG--EAQVS 63
Query: 329 GDD 337
G D
Sbjct: 64 GPD 66
>At1g19780.1 68414.m02473 cyclic nucleotide-regulated ion channel,
putative (CNGC8) similar to cyclic nucleotide and
calmodulin-regulated ion channel GI:4581207 from
(Arabidopsis thaliana)
Length = 728
Score = 30.3 bits (65), Expect = 0.80
Identities = 19/91 (20%), Positives = 39/91 (42%)
Frame = +2
Query: 68 ETYDPEEDDSDEGAPAVFPKSDAQRARLAEAVRGILLFRSLDAQQMQQVLDAMFEKRSEP 247
ET +E++ + P + D +R VR + LF ++D + + + + +
Sbjct: 448 ETRGVDEENIVQSLPKDL-RRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTE 506
Query: 248 GEYVIRQGDDGDNFYVIENGVFDVLVTGDDR 340
Y++R+GD + I G + + T R
Sbjct: 507 STYIVREGDPVNEMLFIIRGRLESVTTDGGR 537
>At1g15990.1 68414.m01918 cyclic nucleotide-regulated ion channel,
putative (CNGC7) similar to cyclic nucleotide and
calmodulin-regulated ion channel protein GI:4581207 from
[Arabidopsis thaliana]
Length = 709
Score = 30.3 bits (65), Expect = 0.80
Identities = 19/91 (20%), Positives = 39/91 (42%)
Frame = +2
Query: 68 ETYDPEEDDSDEGAPAVFPKSDAQRARLAEAVRGILLFRSLDAQQMQQVLDAMFEKRSEP 247
ET +E++ + P + D +R VR + LF ++D + + + + +
Sbjct: 438 ETRGVDEENIVQSLPKDL-RRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLFTE 496
Query: 248 GEYVIRQGDDGDNFYVIENGVFDVLVTGDDR 340
Y++R+GD + I G + + T R
Sbjct: 497 STYIVREGDPVNEMMFIIRGRLESVTTDGGR 527
>At1g01340.1 68414.m00049 cyclic nucleotide-regulated ion channel
(CNGC10) (ACBK1) almost identical to CaM-regulated
potassium ion channel (ACBK1) GI:8515883 from
[Arabidopsis thaliana]; contains Pfam domain, PF00520:
Ion transport protein
Length = 706
Score = 30.3 bits (65), Expect = 0.80
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Frame = +2
Query: 68 ETYDPEEDDSDEGAPAVFPKSDAQRARLAEAVRGILLFRSLDAQQMQQVLDAMFEKRSEP 247
ET EE+ P + D +R + ++ + LF +D Q + V D +
Sbjct: 433 ETRGVEEETLLRNLPKDL-RRDIKRHLCLDLLKKVPLFEIMDEQLLDAVCDRLRPVLYTE 491
Query: 248 GEYVIRQGDD-GDNFYVIENGVFDVLVTG 331
YVIR+GD G+ +V+ + G
Sbjct: 492 NSYVIREGDPVGEMLFVMRGRLVSATTNG 520
>At2g28690.1 68415.m03487 expressed protein
Length = 231
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -3
Query: 235 LFEHRIQNLLHLLRVKRTEQQYAPDRLSE 149
L + ++NLLHLL++ R E+ A D+L +
Sbjct: 41 LHQEEVKNLLHLLKLARQERDEAKDQLQK 69
>At1g09080.1 68414.m01013 luminal binding protein 3 (BiP-3) (BP3)
Similar to Arabidopsis luminal binding protein
(gb|D89342); contains Pfam domain PF00012: dnaK protein
Length = 678
Score = 29.5 bits (63), Expect = 1.4
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = +2
Query: 110 PAVFPKSDAQRARLAEAVRGILLFRSLDAQQMQQVLDAMFEKRSEPG--EYVIRQGDDGD 283
PA F + Q + A A+ G+ + R ++ + + +K E Y + G
Sbjct: 193 PAYFNDAQRQATKDAGAIAGLNVVRIINEPTGAAIAYGLDKKGGESNILVYDLGGGTFDV 252
Query: 284 NFYVIENGVFDVLVTGDD 337
+ I+NGVF+VL T D
Sbjct: 253 SILTIDNGVFEVLSTSGD 270
>At4g00510.1 68417.m00070 cyclic nucleotide-binding
domain-containing protein contains Pfam profile: PF00027
cyclic nucleotide-binding domain
Length = 175
Score = 29.1 bits (62), Expect = 1.9
Identities = 17/87 (19%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Frame = +2
Query: 149 LAEAVRGILLFRSLDAQQMQQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFDVLV- 325
+ E + + L + L + ++++ + + K + G+YV+R+ + D Y + G V
Sbjct: 6 VVEFLGNVTLLQRLPSSSLKRISEVVVFKGYDRGDYVVRENQNVDGVYFLLQGQVRAQVL 65
Query: 326 --TGDDRVEKVV---HTYEGSGSFGEL 391
G++ ++ + + G G FG++
Sbjct: 66 RSAGEENYQEFPLKRYDFFGHGIFGDV 92
>At1g77460.1 68414.m09020 C2 domain-containing protein /
armadillo/beta-catenin repeat family protein similar to
CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
profiles PF00514: Armadillo/beta-catenin-like repeat,
PF00168: C2 domain
Length = 2110
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -3
Query: 385 AKRTGTFVCVDHLFDAVVSGDQDVENAVLD 296
A TF C+ HL A+ SG +DV+ VLD
Sbjct: 1899 ASEAATF-CIPHLVGALKSGVEDVQGLVLD 1927
>At5g04640.1 68418.m00470 MADS-box family protein SLM3 MADS-box
protein, S.latifolia, EMBL:SLSLM3
Length = 322
Score = 28.7 bits (61), Expect = 2.5
Identities = 21/70 (30%), Positives = 31/70 (44%)
Frame = -3
Query: 490 EQDATERVAVHGPQSAGGLGPYRCRPRHVVHQGQFAKRTGTFVCVDHLFDAVVSGDQDVE 311
E+D ++ +HG P C V+ F K T F +D +FD V + +
Sbjct: 129 EEDVKKKGVLHGTHQKQTFNPESCS----VNFDGFNKNTEEFD-LDEIFDYVSTAEALSM 183
Query: 310 NAVLDDVEVV 281
N +DDV VV
Sbjct: 184 NLDMDDVSVV 193
>At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel,
putative (CNGC16) similar to cyclic nucleotide and
calmodulin-regulated ion channel (cngc6) GI:4581207 from
[Arabidopsis thaliana]
Length = 705
Score = 28.7 bits (61), Expect = 2.5
Identities = 17/68 (25%), Positives = 27/68 (39%)
Frame = +2
Query: 137 QRARLAEAVRGILLFRSLDAQQMQQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFD 316
QR VR + F +D Q + + + + + YVIR+GD + I G +
Sbjct: 444 QRHLCLALVRRVPFFAQMDDQLLDAICERLVPSLNTKDTYVIREGDPVNEMLFIIRGQME 503
Query: 317 VLVTGDDR 340
T R
Sbjct: 504 SSTTDGGR 511
>At3g08670.1 68416.m01007 expressed protein
Length = 567
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = -1
Query: 450 RAPAVWARTDAARGMLYIRASSPNEPEPSYVWTTFSTRSSPVTRTSKTP 304
R+P+ T +A YIR SSP+ S + TR+S +R+S TP
Sbjct: 174 RSPSSILNTSSASVSSYIRPSSPSSRSSSSARPSTPTRTSSASRSS-TP 221
>At2g19440.1 68415.m02269 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]; an isoform
contains a non-consensus GA-AG intron
Length = 478
Score = 28.3 bits (60), Expect = 3.2
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = -3
Query: 139 LCVRLGEHG----RGSFVRIILFGVISLGENGFAPIVKARHWRLF 17
L RLGE+ R +++ + LFG++ AP RHW +F
Sbjct: 284 LLPRLGENRGTPLRPTYIEVYLFGLLDEDAKSIAPGEFERHWGIF 328
>At5g42020.2 68418.m05116 luminal binding protein 2 (BiP-2) (BP2)
similar to SWISS-PROT: Q39043; GI:1303695; luminal
binding protein (BiP) [Arabidopsis thaliana]
Length = 613
Score = 27.9 bits (59), Expect = 4.3
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = +2
Query: 110 PAVFPKSDAQRARLAEAVRGILLFRSLDAQQMQQVLDAMFEKRSEPGEYVIRQGDDGDNF 289
PA F + Q + A + G+ + R ++ + + +K E V G +
Sbjct: 179 PAYFNDAQRQATKDAGVIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDV 238
Query: 290 YV--IENGVFDVLVTGDD 337
V I+NGVF+VL T D
Sbjct: 239 SVLTIDNGVFEVLSTNGD 256
>At5g42020.1 68418.m05115 luminal binding protein 2 (BiP-2) (BP2)
similar to SWISS-PROT: Q39043; GI:1303695; luminal
binding protein (BiP) [Arabidopsis thaliana]
Length = 668
Score = 27.9 bits (59), Expect = 4.3
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = +2
Query: 110 PAVFPKSDAQRARLAEAVRGILLFRSLDAQQMQQVLDAMFEKRSEPGEYVIRQGDDGDNF 289
PA F + Q + A + G+ + R ++ + + +K E V G +
Sbjct: 179 PAYFNDAQRQATKDAGVIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDV 238
Query: 290 YV--IENGVFDVLVTGDD 337
V I+NGVF+VL T D
Sbjct: 239 SVLTIDNGVFEVLSTNGD 256
>At5g40590.1 68418.m04926 DC1 domain-containing protein predicted
protein, Arabidopsis thaliana
Length = 234
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Frame = -2
Query: 95 NHPLRGHKSRRKR--ICADC 42
NHPLRGHK K IC+ C
Sbjct: 13 NHPLRGHKCEAKDEIICSGC 32
>At5g28540.1 68418.m03480 luminal binding protein 1 (BiP-1) (BP1)
SWISS-PROT:Q9LKR3 PMID:8888624
Length = 669
Score = 27.9 bits (59), Expect = 4.3
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = +2
Query: 110 PAVFPKSDAQRARLAEAVRGILLFRSLDAQQMQQVLDAMFEKRSEPGEYVIRQGDDGDNF 289
PA F + Q + A + G+ + R ++ + + +K E V G +
Sbjct: 179 PAYFNDAQRQATKDAGVIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDV 238
Query: 290 YV--IENGVFDVLVTGDD 337
V I+NGVF+VL T D
Sbjct: 239 SVLTIDNGVFEVLSTNGD 256
>At4g33480.1 68417.m04755 expressed protein
Length = 336
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -3
Query: 409 HVVHQGQ-FAKRTGTFVCVDHLFDAVVSGDQDVENAVLDDVEV 284
H+VH G + R G D++FD QDVE + VE+
Sbjct: 221 HLVHSGFCYTARGGFCYTEDNVFDFRTDDGQDVEGLPTEGVEI 263
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 27.5 bits (58), Expect = 5.7
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -1
Query: 405 LYIRASSPNEPEPSYV-WTTFSTRSSPVTRTSKTPFSMT*KLSPSSPCLITYSPGS 241
L + SSP P PS ++ S SP +S + LSPSSP ++ SP S
Sbjct: 61 LSLSPSSPPPPPPSSSPLSSLSPSLSPSPPSSSPSSAPPSSLSPSSPPPLSLSPSS 116
>At1g51915.1 68414.m05852 cryptdin protein-related contains weak
similarity to Swiss-Prot:P17533 cryptdin-related protein
1C precursor (CRS1C) [Mus musculus]
Length = 67
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = -1
Query: 285 LSPSSPCLITYSPGSDLFSNIASRTC--CICCASRERNSSMP 166
LSP PC T + D + + R C C+CCA R + P
Sbjct: 20 LSPILPCQATRAH-LDAETRMLRRVCPSCVCCAPAPRGACCP 60
>At1g08400.1 68414.m00929 chromosome structural maintenance
protein-related contains weak similarity to
RAD50-interacting protein 1 [Homo sapiens]
gi|11967435|gb|AAG42101
Length = 804
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = -3
Query: 295 DVEVVAVIALSDYVLAGLGSLFEHRIQNLLHLLRVKRTEQQYAPDRLSETGSLCVRL 125
+V+ A++ + G+ F R++ +L LLR+ E+ LS +G+ C++L
Sbjct: 731 EVDAEALLTVLKPYCVRPGAFFP-RVREILRLLRMHEEEKARLRGALSRSGNTCLKL 786
>At5g18220.1 68418.m02138 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 488
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = -3
Query: 139 LCVRLGEHGRGSFVRIILFGVISLGENGFAPIVKARHWRLF 17
L G R ++ + LFG I AP RHW +F
Sbjct: 295 LAANRGTPMRPGYIEVYLFGFIDEDAKSIAPGNFERHWGIF 335
>At2g17740.1 68415.m02055 DC1 domain-containing protein
Length = 248
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = -2
Query: 95 NHPLRGHKSR--RKRICADC*SAPLAAFLQ 12
NHPLRGHK++ + IC+ C L A+ +
Sbjct: 13 NHPLRGHKAQVEDEIICSGCDLDLLGAYFK 42
>At1g64760.1 68414.m07343 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 481
Score = 27.1 bits (57), Expect = 7.5
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -3
Query: 112 RGSFVRIILFGVISLGENGFAPIVKARHWRLF 17
R +++ + LFG++ AP RHW +F
Sbjct: 301 RPTYIEVYLFGLLDEDAKSIAPGPFERHWGIF 332
>At4g29050.1 68417.m04155 lectin protein kinase family protein
contains Pfam domains, PF00138: Legume lectins alpha
domain, PF00139: Legume lectins beta domain and PF00069:
Protein kinase domain
Length = 669
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 39 LTIGANPFSPRLMTPKRMILTKEPLPC 119
+T G P PR +P M+LT L C
Sbjct: 538 ITCGRRPVLPRASSPSEMVLTDWVLDC 564
>At3g04010.1 68416.m00422 glycosyl hydrolase family 17 protein
similar to beta-1,3-glucanase GB:S12402 [Nicotiana sp],
GB:CAA03908 [Citrus sinensis], GB:S44364 [Lycopersicon
esculentum]
Length = 491
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -3
Query: 139 LCVRLGEHGRGSFVRIILFGVISLGENGFAPIVKARHWRLF 17
L +G R ++ + LFG I AP RHW +F
Sbjct: 300 LANNVGTPMRKGYIEVYLFGFIDEDAKSVAPGNFERHWGIF 340
>At1g44120.1 68414.m05096 C2 domain-containing protein /
armadillo/beta-catenin repeat family protein similar to
CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
profiles PF00514: Armadillo/beta-catenin-like repeat,
PF00168: C2 domain
Length = 2114
Score = 26.6 bits (56), Expect = 9.9
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = -3
Query: 361 CVDHLFDAVVSGDQDVENAVLDDV 290
C+ HL A+ SG+Q+ ++ +D +
Sbjct: 1912 CIPHLIGALKSGEQEARDSAMDTI 1935
>At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein
contains Pfam profile: PF01363 FYVE zinc finger
Length = 601
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = -2
Query: 455 PTERRRSGPVQMPPAACCTSGPVRQTNRNLRMCGPPF 345
PT P PPA +GP T RN PPF
Sbjct: 20 PTPNPNPNPNPSPPAPATVAGPTDLT-RNTYASAPPF 55
>At1g03060.1 68414.m00280 WD-40 repeat family protein /
beige-related similar to BEIGE (GI:3928547) [Rattus
norvegicus]; Similar to gb|U70015 lysosomal trafficking
regulator from Mus musculus and contains 2 Pfam PF00400
WD-40, G-beta repeats. ESTs gb|T43386 and gb|AA395236
come from this gene
Length = 3601
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/42 (26%), Positives = 26/42 (61%)
Frame = -3
Query: 376 TGTFVCVDHLFDAVVSGDQDVENAVLDDVEVVAVIALSDYVL 251
+G F C+ H+ A+++ D+ ++ + D+EVV+ + Y++
Sbjct: 188 SGIFCCLIHVLIALLAYDELSKSKITGDLEVVSAEKDAGYIV 229
>At1g02110.1 68414.m00137 proline-rich family protein contains
proline-rich domain, INTERPRO:IPR000694
Length = 679
Score = 26.6 bits (56), Expect = 9.9
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Frame = -1
Query: 516 SLRFLNALLSRMRRNVWRSMAHRAPAVWARTDAARGMLYIRASSPNEPEPSYVWTTFSTR 337
SLR + LS S++ PAV+ R +++ + +S EP P + R
Sbjct: 44 SLRLTGSALSSFAAGEPLSVSENTPAVFLRPSSSQDAPRVPSSHSPEPPPPPI------R 97
Query: 336 SSP-VTRTSKTPFSMT*KLSPSSPCLITY 253
S P TR + P ++ SSP Y
Sbjct: 98 SKPKPTRPRRLPHILSDSSPSSSPATSFY 126
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,691,920
Number of Sequences: 28952
Number of extensions: 254639
Number of successful extensions: 1007
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -