Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30234
         (516 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7P3C4 Cluster: Chromosome chr1 scaffold_5, whole genom...    38   0.18 
UniRef50_UPI0001554A21 Cluster: PREDICTED: similar to Transmembr...    32   8.9  

>UniRef50_A7P3C4 Cluster: Chromosome chr1 scaffold_5, whole genome
           shotgun sequence; n=6; Magnoliophyta|Rep: Chromosome
           chr1 scaffold_5, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 374

 Score = 37.5 bits (83), Expect = 0.18
 Identities = 20/53 (37%), Positives = 26/53 (49%)
 Frame = -1

Query: 237 KALEGGTVPKILATLPRWTARLTLCAKYQPALASCVTSSKRLEISVKILFALG 79
           K +  G  P ILA LP W    T+  K +  L S V SS +L I   ++ A G
Sbjct: 77  KGMYRGLSPTILALLPNWAVYFTVYQKLKDVLHSHVDSSSQLTIGANVIAASG 129


>UniRef50_UPI0001554A21 Cluster: PREDICTED: similar to Transmembrane
           protein 61; n=1; Ornithorhynchus anatinus|Rep:
           PREDICTED: similar to Transmembrane protein 61 -
           Ornithorhynchus anatinus
          Length = 1863

 Score = 31.9 bits (69), Expect = 8.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 187 LDSQTHSLCKVPASLSIMCNLLQAFGDFC 101
           L+S    LC +  S S++CN L+A+ D C
Sbjct: 405 LESCVFDLCALEGSRSVLCNALEAYSDTC 433



 Score = 31.9 bits (69), Expect = 8.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 187 LDSQTHSLCKVPASLSIMCNLLQAFGDFC 101
           L+S    LC +  S S++CN L+A+ D C
Sbjct: 612 LESCVFDLCALEGSRSVLCNALEAYADAC 640


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 531,288,530
Number of Sequences: 1657284
Number of extensions: 10723324
Number of successful extensions: 24153
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24150
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)