Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30234
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    28   0.72 
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    27   1.3  
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    26   2.9  
SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho...    25   6.7  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.7  

>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 28.3 bits (60), Expect = 0.72
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 360 DLLPWAVPYTLSPSYFYIRRYCTYTNNIYIICQSKNTRI 476
           +L+   V  TLS +   I+ Y TYTN++  I    N R+
Sbjct: 458 ELIAHGVSNTLSGAVGSIQNYMTYTNSLMFIRSGGNNRL 496


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 411  CKNTMVTEYMALPTVTDHVSGRISFILRYT 322
            CK++    Y+A P    H+S  IS IL YT
Sbjct: 1603 CKDSGFDSYLAKPITLQHLSLIISGILNYT 1632


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 47  IRNIETMGP*GPKANKILTEISKRLEEVTHDAKAGWYFAQ 166
           +  + ++ P      ++LT +  ++EE   +A A WY AQ
Sbjct: 319 LSEVSSIPPMVENKKEVLTYLISKVEEAITEANAQWYEAQ 358


>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
           phospholipase C |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 424

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = +2

Query: 134 HDAKAGWYFAQRVSLAVQRGNVASILG--TVPPSSALEDLFYCVG 262
           H     WY ++ +  AVQRG++    G   + P S   ++    G
Sbjct: 152 HRLSQAWYISKLLRAAVQRGHIVIAAGDFNIQPLSVPHEIITSYG 196


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 166 LCKVPASLSIMCNLLQAFGDFC 101
           LCK PA   +  NLL A   FC
Sbjct: 453 LCKSPAQKCLFSNLLTATRKFC 474


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,257,444
Number of Sequences: 5004
Number of extensions: 47672
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)