Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30234
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0207 - 13790801-13792057                                         30   1.3  
12_02_0072 + 13218669-13218706,13218715-13218781,13220400-132204...    29   2.2  
05_04_0124 + 18232961-18236636,18236810-18237288,18237549-182376...    28   3.9  
05_04_0122 + 18198594-18202269,18202551-18202591,18203273-182032...    28   3.9  

>01_03_0207 - 13790801-13792057
          Length = 418

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/60 (25%), Positives = 34/60 (56%)
 Frame = -1

Query: 219 TVPKILATLPRWTARLTLCAKYQPALASCVTSSKRLEISVKILFALGP*GPIVSMFLILH 40
           +VP I   LPRW +R++   +     AS +T++ +L + V I++ L     ++  +++++
Sbjct: 314 SVPSIALQLPRWVSRISAQIR---LFASVLTTALQLGLLVPIIYVLLKSVAVIMFYVLIY 370


>12_02_0072 +
           13218669-13218706,13218715-13218781,13220400-13220471,
           13222107-13222182,13222309-13222943
          Length = 295

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +3

Query: 309 IPRNMYNVK*MKYAQRHDLLPWAVPYTLSPSYFYIRRYCTYTN-NIYIIC 455
           +P   +N++ M    R    P A PY   P Y+Y+R      N N   IC
Sbjct: 246 LPPQYFNMEYMNQYHRPPPPPPAYPYVPPPQYYYVRNMSMEENPNSCAIC 295


>05_04_0124 +
           18232961-18236636,18236810-18237288,18237549-18237629,
           18238033-18238041,18238096-18238248
          Length = 1465

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +2

Query: 170 VSLAVQRGNVASILGTVPPSSALEDL 247
           V +  +  NVAS++GTVPP  ALE L
Sbjct: 300 VVVTTRNSNVASVMGTVPP-LALEQL 324


>05_04_0122 +
           18198594-18202269,18202551-18202591,18203273-18203281,
           18203336-18203551,18204257-18204361,18204761-18204919
          Length = 1401

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +2

Query: 170 VSLAVQRGNVASILGTVPPSSALEDL 247
           V +  +  NVAS++GTVPP  ALE L
Sbjct: 300 VVVTTRNSNVASVMGTVPP-LALEQL 324


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,868,187
Number of Sequences: 37544
Number of extensions: 280714
Number of successful extensions: 551
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)