Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30234
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58064| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_45219| Best HMM Match : rve (HMM E-Value=3e-14)                     28   5.3  
SB_51460| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-33)         27   9.2  

>SB_58064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1027

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 239 PKRLKEAQFPRYWLRCLVGQPDSLSVQSTSQ 147
           PK  K+  F R W R L+ Q  S SV+   Q
Sbjct: 402 PKETKDTDFERKWARLLMKQDSSSSVRRPRQ 432


>SB_45219| Best HMM Match : rve (HMM E-Value=3e-14)
          Length = 360

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -1

Query: 240 SKALEGGTVPKILATLPRWTARLTLCA 160
           +K++     PK L++ PR+ AR+++CA
Sbjct: 334 TKSMASEAPPKTLSSHPRYAARMSMCA 360


>SB_51460| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-33)
          Length = 1584

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 271 HNSTHTVEQIFQSA-*RRHSSQDTGYVASLDSQTHSLCKVPA 149
           HN+ HT+  +F S+   R   ++TG +  ++   HS    P+
Sbjct: 643 HNTKHTIRVVFDSSVLMRFRKENTGVMCDVEQMFHSFHVEPS 684


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,483,949
Number of Sequences: 59808
Number of extensions: 348507
Number of successful extensions: 814
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)