Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30234
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82287-2|CAB05312.1|  502|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z78015-3|CAB01435.1|  448|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U41534-6|AAB47598.1|  375|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>Z82287-2|CAB05312.1|  502|Caenorhabditis elegans Hypothetical
           protein ZK550.2 protein.
          Length = 502

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 362 IMSLGVFHLFYVIHVPWYF 306
           +  LGVF  F+V++ PW+F
Sbjct: 335 LFGLGVFVAFHVVNYPWWF 353


>Z78015-3|CAB01435.1|  448|Caenorhabditis elegans Hypothetical
           protein R02D5.6 protein.
          Length = 448

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 400 DGDRVYGTAHGNRSCLWAYFIYFTLYMFLGIL 305
           DGDRV GT H N S  +  F Y T +    +L
Sbjct: 192 DGDRVVGTRHLNLSNEFPTFRYATFHFIFIVL 223


>U41534-6|AAB47598.1|  375|Caenorhabditis elegans Hypothetical
           protein C16A3.4 protein.
          Length = 375

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -2

Query: 500 DRAFLRS*YSCVF*LTYDVNIIRICTISPDVKIRW*QSIWHC 375
           DR +L     C+  L   V   R C   PDVK R+ +S+  C
Sbjct: 191 DRQYLSDELGCLSYLGLKVGAGRCCIFCPDVKARY-ESVQSC 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,389,329
Number of Sequences: 27780
Number of extensions: 267593
Number of successful extensions: 582
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)