Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30234
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10310.1 68417.m01696 sodium transporter (HKT1) identical to ...    29   1.9  
At4g20860.1 68417.m03026 FAD-binding domain-containing protein s...    28   4.3  

>At4g10310.1 68417.m01696 sodium transporter (HKT1) identical to
           sodium transporter AtHKT1 [Arabidopsis thaliana]
           gi|7716474|gb|AAF68393
          Length = 506

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 364 RSCLWAYFIYFTLYMFLGILLL 299
           RS  + YFIYF  + FLG L L
Sbjct: 19  RSLFFLYFIYFLFFSFLGFLAL 40


>At4g20860.1 68417.m03026 FAD-binding domain-containing protein
           simlar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 530

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 148 WLVLCTESESGCPTRQRSQYLGNCASFKRFGRSV 249
           +LVLC +S    PTR++ Q   NC S K+F  ++
Sbjct: 12  FLVLCVKSVYSTPTREQFQ---NCLSTKQFNSTL 42


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,411,938
Number of Sequences: 28952
Number of extensions: 235640
Number of successful extensions: 489
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)