Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30231
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         25   5.1  
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    25   6.7  
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb...    25   6.7  

>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 169 KYPQACGWTLVFLLSPVWFPGKNRTTPSHPV 261
           ++P A GWT++  L+ + F     T   +P+
Sbjct: 671 RFPNAYGWTVIKHLTEILFEQNTSTAYMNPI 701


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 134 IVHINMKNTHFSNTLRLAAGLLYFYYHLCG-SRVRIGPLHLI 256
           +V  +  +T   + L+L  GL+YF Y   G S   + P+H +
Sbjct: 325 LVQYSPIDTFAEHKLQLVGGLVYFLYPPLGLSEALLHPVHTV 366


>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 494

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 8/12 (66%), Positives = 12/12 (100%)
 Frame = -1

Query: 264 IHGMRWSGPILT 229
           +HGM++SGPIL+
Sbjct: 285 VHGMKYSGPILS 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,099,123
Number of Sequences: 5004
Number of extensions: 42285
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)