Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30231
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_1023 + 13265179-13265330,13265526-13265637,13265752-132660... 33 0.18
01_03_0099 + 12547235-12547510 29 2.9
05_02_0100 + 6594787-6594878,6595443-6595728,6595809-6595887,659... 28 5.1
03_01_0643 - 4708245-4708355,4708456-4708800,4709124-4709700,470... 27 6.8
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967... 27 8.9
01_07_0155 - 41541475-41541831,41541922-41542051,41542144-415424... 27 8.9
>03_02_1023 + 13265179-13265330,13265526-13265637,13265752-13266048,
13266361-13266623,13267637-13267847,13268420-13268590,
13268671-13268748,13269275-13269520,13269763-13271868,
13272122-13273904,13274113-13274216,13274752-13275108,
13275210-13275328,13276175-13276436,13276669-13276893,
13277075-13277214,13278087-13278159,13278431-13278532,
13278647-13279018,13279183-13279230,13279516-13279900,
13280440-13280558
Length = 2574
Score = 32.7 bits (71), Expect = 0.18
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -3
Query: 340 GPSTQGSSHLT*MLINIYSLSRLLRHPRDEMEWSYSYPGTTQVIIKIQE 194
G T G+S + +L++IY L L M W Y +PG Q K QE
Sbjct: 2220 GAPTGGNSVIESLLVDIYPLKIYLTEAMYRMMWGYFFPGDEQHPQKRQE 2268
>01_03_0099 + 12547235-12547510
Length = 91
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 167 SNTLRLAAGLLYFYYHLCGSRVRIGP 244
+N LAAGL+ ++H C RVR+ P
Sbjct: 55 ANNSGLAAGLIRLHFHDCFVRVRLSP 80
>05_02_0100 +
6594787-6594878,6595443-6595728,6595809-6595887,
6595964-6596013,6597281-6597478,6597555-6597612,
6598388-6598496,6599253-6599321,6599684-6599812,
6599970-6600082,6600386-6600479,6602827-6602917,
6604145-6604233,6604715-6604856,6605849-6606196,
6606314-6607408
Length = 1013
Score = 27.9 bits (59), Expect = 5.1
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -3
Query: 394 NTRLCVAIQE*DGGTELLGPS----TQGSSHLT*MLINIYSLSRL 272
N LCV + + DGG EL QGSSH T L + S S +
Sbjct: 40 NGLLCVGLHQTDGGDELYATECLKMNQGSSHETNKLDAVMSASTM 84
>03_01_0643 -
4708245-4708355,4708456-4708800,4709124-4709700,
4709780-4710462,4710618-4710980,4712199-4712530,
4712856-4713048,4713748-4713790,4713964-4714052,
4714186-4714301,4714816-4714935,4715538-4715577
Length = 1003
Score = 27.5 bits (58), Expect = 6.8
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = -3
Query: 409 YITCENTRLCVAIQE*DGGTELL-GPSTQGSSHLT*MLINIYSLSRLLRHPRDEMEWSYS 233
Y+TC N C ++E D + + PS GS++ + L +LL +DE++ + S
Sbjct: 484 YVTCSNRLACSEVREFDFRPQYMDAPSPLGSTN---KIYLQKRLDKLLSVEQDEIQTTLS 540
Query: 232 YPGTTQVI 209
P T ++I
Sbjct: 541 NP-TKEII 547
>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
16196822-16197001,16197090-16197371,16197471-16199141,
16199257-16199463,16199566-16199700,16199792-16200082,
16200403-16200621,16200876-16201034,16201120-16201181,
16201257-16201383,16201460-16201693,16201777-16202003,
16202163-16202257,16202341-16202468,16202574-16202594,
16202765-16202921,16203007-16203075,16203228-16203341,
16203415-16203491,16203576-16203688,16204432-16204507,
16204592-16204756,16204825-16204952,16205049-16205130,
16205426-16205548,16205633-16205860,16205933-16206034,
16206144-16206341,16206581-16206760,16206868-16207020,
16207690-16207797,16208201-16208355,16208786-16208912,
16209825-16209914,16209986-16210127,16210303-16210379,
16210467-16210582,16210638-16210773,16211130-16211198,
16211279-16211361,16211655-16211720,16211788-16211974,
16212054-16213547,16213635-16214165,16214234-16214363,
16214407-16215878,16216359-16216364,16216750-16217055,
16217364-16217468,16217577-16217772,16217862-16217929,
16218853-16220631,16221026-16221151,16221604-16221780,
16221997-16222128,16223461-16223498,16223710-16223788,
16224175-16224284,16224787-16224935,16225027-16225197,
16225281-16225552,16226355-16226442,16227942-16228369
Length = 5157
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 322 ILECWVRVVQYHRLTLVLRHTILCSRR*YKV--RYLLNDVHSRY*N 453
ILEC+ +V YH++ +V L S R + L D H+R N
Sbjct: 2467 ILECYREIVAYHKIDVVAHPIPLLSMRLLDMTCSVTLKDCHNRLRN 2512
>01_07_0155 -
41541475-41541831,41541922-41542051,41542144-41542433,
41542526-41542707,41542788-41543007,41543117-41543135,
41543222-41543382
Length = 452
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +2
Query: 92 ITSFRSNRPNEEFEIVHINMKNTH--FSNTLRLAAGLLYFYYHLCG 223
I + +RPN EF H+N +N LA GLL Y + G
Sbjct: 142 IPAVAKDRPNIEFVFTHLNTENGMGIHDKAYILAVGLLMSQYSVIG 187
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,014,698
Number of Sequences: 37544
Number of extensions: 260739
Number of successful extensions: 391
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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