Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30228
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce...   105   3e-24
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac...    30   0.24 
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch...    29   0.55 
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    28   0.72 
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    27   1.3  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   1.7  
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    26   3.8  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    25   6.7  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.9  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    25   8.9  

>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score =  105 bits (253), Expect = 3e-24
 Identities = 55/130 (42%), Positives = 74/130 (56%), Gaps = 1/130 (0%)
 Frame = +3

Query: 27  FARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRL 206
           F RYVE GRV LV  G   GKL  +VD++D  RAL+D P S  PRQ IR   + LT   +
Sbjct: 4   FKRYVEVGRVVLVTKGEYTGKLAVIVDIVDHKRALIDSPCSEFPRQVIRYGSVVLTHIVM 63

Query: 207 KYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFK-LTAARVKRNR 383
           K    A + +V K W    +  KW  S WA+KL  K+ R+Q+ D+DRF  +   + +R +
Sbjct: 64  KLPRGARSGIVAKKWKAQDVCNKWASSAWAKKLEAKKVRSQLNDFDRFAVMRLKKQRREQ 123

Query: 384 ARTAVFKSLK 413
              AV K+LK
Sbjct: 124 VNVAVAKALK 133


>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 33  RYVEPGRVALVADGPLKGKLVSVVDVIDQ 119
           + ++PG+VAL+  G   GK V ++  IDQ
Sbjct: 3   KILKPGKVALITRGRFAGKKVVILQAIDQ 31


>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 136

 Score = 28.7 bits (61), Expect = 0.55
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 33  RYVEPGRVALVADGPLKGKLVSVVDVIDQ 119
           + ++PG+VALV  G   GK V ++  +DQ
Sbjct: 3   KILKPGKVALVTRGRFAGKKVVILQNVDQ 31


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 28.3 bits (60), Expect = 0.72
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 341 VICHLCALLFVR*LLGPLTFCPFFIEFSICPRF 243
           V+C  CAL  +R    P+ FCP  ++F+  P+F
Sbjct: 508 VVCRTCALSRMRGR--PVGFCPLQLDFNNWPKF 538


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/49 (32%), Positives = 20/49 (40%)
 Frame = -2

Query: 479 HFFRSRFRDIFLAEGTSTRSLHLQALEYGSPGTVPLNSCSC*LEPIVIC 333
           HF    F+  +   G +  S H   LE+GS     LN  S     I IC
Sbjct: 442 HFLTGNFKCAYSYLGFAIHSAHTLGLEHGSTDNSTLNEVSTEETSIRIC 490


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 18/68 (26%), Positives = 36/68 (52%)
 Frame = +3

Query: 228 TRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKS 407
           + L  +A  + +  E+  E++  +KLA +EKR +  +    K    R+++ RA+ A  K 
Sbjct: 703 SELSERAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARKAEEKRLQKERAKYA--KQ 760

Query: 408 LKVKAARA 431
           +  ++A A
Sbjct: 761 MSRESAHA 768


>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +3

Query: 45  PGRVALVADGPLKGKLVSVVDVIDQTRALVDGP--GSGVPRQQI 170
           PG V ++  G  +GK V V+  ++ T  +V GP   +GVP +++
Sbjct: 54  PGTVCILLAGRFRGKRVVVLSQLEDT-LVVTGPYKVNGVPIRRV 96


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 130 WLMDPAVEYLGNRSA*TNSISQNSASNTRSQPLL 231
           ++ D AV Y  N+    NS++ ++A N  S PL+
Sbjct: 132 YMPDSAVAYNPNQDQFGNSVNVSAACNNVSAPLI 165


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 176 KPTPSHKIPPQIRVHSPYSSCE 241
           KP P+ ++ PQ  ++SP  S E
Sbjct: 377 KPKPAKELSPQATLNSPIQSAE 398


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 151 PLPGPSTSARVWSITSTTLTNFPFKG 74
           P+PG +T     ++ S T  N+P+ G
Sbjct: 51  PVPGTTTIYPTSNVASNTSENYPYTG 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,050,945
Number of Sequences: 5004
Number of extensions: 40331
Number of successful extensions: 101
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)