Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30227
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g26100.2 68416.m03250 regulator of chromosome condensation (R... 29 1.4
At3g26100.1 68416.m03251 regulator of chromosome condensation (R... 29 1.4
At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid t... 28 3.2
At2g17230.1 68415.m01990 phosphate-responsive 1 family protein s... 27 7.5
At5g21990.1 68418.m02557 tetratricopeptide repeat (TPR)-containi... 27 9.9
At5g01720.1 68418.m00090 F-box family protein (FBL3) contains si... 27 9.9
At3g52710.1 68416.m05807 expressed protein predicted protein, Ar... 27 9.9
At1g44120.1 68414.m05096 C2 domain-containing protein / armadill... 27 9.9
>At3g26100.2 68416.m03250 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 532
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -1
Query: 354 LSLGNVRCRRLESTLVSDVGHSVSNTVRADVRKFSAN 244
L G CRR +S V+ GHSV+ T + +V F N
Sbjct: 134 LLAGEACCRREKSQAVAGPGHSVAVTSKGEVYTFGYN 170
>At3g26100.1 68416.m03251 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 432
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -1
Query: 354 LSLGNVRCRRLESTLVSDVGHSVSNTVRADVRKFSAN 244
L G CRR +S V+ GHSV+ T + +V F N
Sbjct: 34 LLAGEACCRREKSQAVAGPGHSVAVTSKGEVYTFGYN 70
>At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein low similarity to
glucoamylase S1/S2 [Precursor] from Saccharomyces
cerevisiae [SP|P08640], proteophosphoglycan from
Leishmania major [GI:5420387]; contains Pfam protease
inhibitor/seed storage/LTP family domain PF00234
Length = 256
Score = 28.3 bits (60), Expect = 3.2
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = -2
Query: 284 VTPSGPMYANSPRTSRASFSVPMFFS*PVS*ALIPLEVS*PVLYPSTPMLSLS 126
+TPS P ++SP R S S PVS + P S P + S+P+++ S
Sbjct: 151 ITPSSPAVSHSPPPVRHSSPPVSHSSPPVSHSSPPTSRSSPAVSHSSPVVAAS 203
>At2g17230.1 68415.m01990 phosphate-responsive 1 family protein
similar to phi-1 (phosphate-induced gene) [Nicotiana
tabacum] GI:3759184; contains Pfam profile PF04674:
Phosphate-induced protein 1 conserved region
Length = 363
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -1
Query: 492 FFFFFLLKRMYYHQDRITDRLDSNNKRKLFK*MSIFGLDAGACSVDL 352
FFFFF L +Y IT L +NN K ++ + + A + L
Sbjct: 10 FFFFFTLSSFFY----ITSSLQNNNNNKHTATVNSLNIPSAAAEITL 52
>At5g21990.1 68418.m02557 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 554
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 265 IGPDGVTYAVTYVANEGGFQPSAPHIPKA 351
+G G + ++VA GF+PS P P A
Sbjct: 413 LGASGSSSGNSFVAPRSGFEPSIPSAPPA 441
>At5g01720.1 68418.m00090 F-box family protein (FBL3) contains
similarity to leucine-rich repeats containing F-box
protein FBL3 GI:5919219 from [Homo sapiens]
Length = 665
Score = 26.6 bits (56), Expect = 9.9
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Frame = -1
Query: 459 YHQDRITDR-LDSNNKRKLFK*MSIFGLDAGACSVDLSLGNVRCRRLESTLVSDVGHSVS 283
Y QD ITD+ L S +K L + G S L+ VRC+RL + S++
Sbjct: 492 YCQD-ITDKSLVSLSKCSLLQTFESRGCP-NITSQGLAAIAVRCKRLAKVDLKKCP-SIN 548
Query: 282 NTVRADVRKFSANLKSFVFSANVLQLTGFLSLDSVG 175
+ + FS NLK S + G LSL ++G
Sbjct: 549 DAGLLALAHFSQNLKQINVSDTAVTEVGLLSLANIG 584
>At3g52710.1 68416.m05807 expressed protein predicted protein,
Arabidopsis thaliana
Length = 289
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 353 KSTEQAPASSPKILIHLKSFRLLLESKRSVIR 448
K AP S+P + S R+ L+SK S+IR
Sbjct: 74 KGNSSAPISNPNTNPNSSSHRISLKSKASIIR 105
>At1g44120.1 68414.m05096 C2 domain-containing protein /
armadillo/beta-catenin repeat family protein similar to
CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
profiles PF00514: Armadillo/beta-catenin-like repeat,
PF00168: C2 domain
Length = 2114
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 338 TFPRLKSTEQAPASSPKILIHLKS 409
TFP+L+S+E A A P ++ LKS
Sbjct: 1899 TFPKLRSSEAATACIPHLIGALKS 1922
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,980,056
Number of Sequences: 28952
Number of extensions: 152108
Number of successful extensions: 365
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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