Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30226
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)                      186   1e-47
SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)             131   3e-31
SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05)                34   0.060
SB_51467| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_14606| Best HMM Match : efhand (HMM E-Value=0.00036)                29   3.0  
SB_31943| Best HMM Match : ResIII (HMM E-Value=1.6)                    28   4.0  
SB_13421| Best HMM Match : Harpin (HMM E-Value=0.62)                   28   4.0  
SB_39530| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_16681| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2)                 28   5.3  
SB_31141| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_9947| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2)              27   6.9  
SB_35370| Best HMM Match : Ank (HMM E-Value=4.8e-06)                   27   9.2  
SB_16120| Best HMM Match : efhand (HMM E-Value=0.0059)                 27   9.2  
SB_830| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   9.2  

>SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)
          Length = 266

 Score =  186 bits (452), Expect = 1e-47
 Identities = 93/166 (56%), Positives = 114/166 (68%), Gaps = 2/166 (1%)
 Frame = +2

Query: 23  MTTLRCVLMLVALAGATFAGPEVT-ELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGH 199
           M  L  +L +VA +G      E   ELK EVVS PE CT K+  GD L+MHYTG L +G+
Sbjct: 1   MKGLMNLLAIVAFSGLALGAEEPKGELKIEVVSKPEKCTRKTHVGDTLSMHYTGRLANGN 60

Query: 200 KFDSSYDRDQPFTFQIGVGQVIKGWDQGLLDMCVGEKRKLTIPASLGYGERGAGNVIPPH 379
           KFDSS DR + F F +G G VI+GW+QGLLDMC+GEKRKLTIP  L YGE GAG  IPPH
Sbjct: 61  KFDSSLDRGKTFDFTLGKGMVIQGWEQGLLDMCIGEKRKLTIPPHLAYGENGAGAAIPPH 120

Query: 380 ATLHFEVELINI-GDSPPATNVFKEIDADKDNMLSREEVSDYLKKQ 514
           ATL+ +VEL+ I G      NVF  ID + D +L++EEV +YLK+Q
Sbjct: 121 ATLYMDVELVEIQGSKESDPNVFGMIDKNNDKVLTQEEVKNYLKEQ 166


>SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score =  131 bits (317), Expect = 3e-31
 Identities = 64/147 (43%), Positives = 95/147 (64%), Gaps = 7/147 (4%)
 Frame = +2

Query: 95  ELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGHKFDSSYDRD---QPFTFQIGVGQVI 265
           +++ E   VP  C  K+K GD + +HYTG + DG  FD++ D     QPF F IG G VI
Sbjct: 99  KIEVEETFVPSDCENKTKVGDHVVVHYTGWMQDGSLFDTTRDHRKGYQPFEFTIGGGTVI 158

Query: 266 KGWDQGLLDMCVGEKRKLTIPASLGYGERGA----GNVIPPHATLHFEVELINIGDSPPA 433
           KG++QG+  MCVG+KRK+ IP +L YG++G+    GN+   + TL + +EL ++   PP 
Sbjct: 159 KGFEQGVTGMCVGQKRKIVIPPALAYGKKGSGDVPGNLDLTNTTLTYNLELFDVRKPPPH 218

Query: 434 TNVFKEIDADKDNMLSREEVSDYLKKQ 514
           +++F  +D + D  LSREEVS Y++KQ
Sbjct: 219 SDMFSHMDENGDRKLSREEVSAYMRKQ 245


>SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05)
          Length = 639

 Score = 34.3 bits (75), Expect = 0.060
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = +2

Query: 152 GDMLTMHYTGTLDD----GHKFDSSYDRDQPFTFQIGVGQVIKG 271
           GD + + YTG L +    G  FDS+   D+ F F+ G G+VIKG
Sbjct: 122 GDAVEVKYTGWLLENGNFGKVFDSNAGTDKTFKFKTGKGKVIKG 165


>SB_51467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 465

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -3

Query: 478 EHVVLIGVDFLEHVCGRWRVTDVDQLHFEMQCSVGRNHVAGSAL 347
           E V+ + V  +E V  R  + DV QLH + + S+GR  V+   L
Sbjct: 181 ESVIAVRVHLVECVWFRLPILDVQQLHVKYERSLGRELVSNLLL 224


>SB_14606| Best HMM Match : efhand (HMM E-Value=0.00036)
          Length = 633

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = +2

Query: 443 FKEIDADKDNMLSREEVSDYLKKQ 514
           F E+D +KD+++SREE  +Y +++
Sbjct: 576 FDEVDVNKDSLISREEFINYQQEK 599


>SB_31943| Best HMM Match : ResIII (HMM E-Value=1.6)
          Length = 1053

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/33 (33%), Positives = 13/33 (39%)
 Frame = -2

Query: 230  VDRDHNSSRTCVRRLACQCSAW*AYRRAWTSWC 132
            V  D +S   C R   C    W    +AW  WC
Sbjct: 956  VSPDASSFEYCARNRRCASQRWKDSAKAWLLWC 988


>SB_13421| Best HMM Match : Harpin (HMM E-Value=0.62)
          Length = 375

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -1

Query: 339 PKDAGIVSLRFSPTHMSSKPWSHPLITC 256
           PK  G  S      H SS  W HP ++C
Sbjct: 257 PKSHGAASPSLMGQHFSSLMWQHPQVSC 284


>SB_39530| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1323

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = -3

Query: 451 FLEH-VCGRWRVTDVDQLHFEMQCSVGRNHVAGSALS--VAQGCGNSQFTFLTNAHVKQA 281
           F++H V  R  V+ ++ ++ E+   +    +    +S  V QG    Q   L NA+ +  
Sbjct: 444 FIKHSVLDRLHVSGLE-VNLELSTMLATQTINSQKISGLVVQGVNEKQDIHLPNAYTRDC 502

Query: 280 LVPSLDHLPNANLERK 233
           +    DH+P     R+
Sbjct: 503 IPAQRDHIPTPESARR 518


>SB_16681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 83  PEVTELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGH 199
           P  T  K +++  P+G  TK +HG++ T+ +     DG+
Sbjct: 51  PTHTTFKPDLIETPKG--TKQRHGNVKTVEFKVVEQDGN 87


>SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2)
          Length = 466

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 83  PEVTELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGH 199
           P  T  K +++  P+G  TK +HG++ T+ +     DG+
Sbjct: 165 PTHTTFKPDLIETPKG--TKQRHGNVKTVEFKVVEQDGN 201


>SB_31141| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 189

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 419 DSPPATNVFKEIDADKDNMLSREEVSDYLKK 511
           D+     VF ++DAD+D  +S EE S+   K
Sbjct: 37  DAEDLGEVFNKLDADRDGRISIEEFSENFMK 67


>SB_9947| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2)
          Length = 405

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
 Frame = +2

Query: 59  LAGATFAGPEVTELKTEVVS-VPEGCTT-KSKHGDMLTMHYTGTLDDGHKFDSSYDRDQP 232
           L G  +  P   E+  ++V  + + C +  SKH D L +  TG  +      S+  + Q 
Sbjct: 164 LIGVIYHPPSNGEMNRQLVDHIDKNCKSFLSKHPDGLVV-VTGDFNPS----STGIKAQY 218

Query: 233 FTFQIGVGQVIKGW--DQGLLDMCVGEKRKLTIPASLGY 343
            T + G+ Q+I     D G+LD C+  K K  +   + Y
Sbjct: 219 VTHKTGLTQIINVLTRDTGILDWCLTNKPKSIVNKHVDY 257


>SB_35370| Best HMM Match : Ank (HMM E-Value=4.8e-06)
          Length = 813

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = -3

Query: 493 HFFAGEHVVLIGVDFLEHVCGRWRVTDVDQLHFEMQCSVGRNHVAGSALSVAQGCGNSQF 314
           H F  E +    VDF+   C  WR+     +    Q + G   +  S L + Q    S+F
Sbjct: 742 HGFFDEIMFTATVDFIASGCSDWRLRGHSSMWSLFQYAFGSYLIERSFLFLKQNTALSRF 801

Query: 313 T 311
           T
Sbjct: 802 T 802


>SB_16120| Best HMM Match : efhand (HMM E-Value=0.0059)
          Length = 399

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 440 VFKEIDADKDNMLSREEVSDYLK 508
           V  ++D +KDN + ++E+  YLK
Sbjct: 375 VMPDLDKNKDNKIQKDELKSYLK 397


>SB_830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1390

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +2

Query: 200 KFDSSY--DRDQPFTFQIGVGQVIKGWDQGLLDMCVGEKRKLTIPASLGYGERGAG 361
           K DS++   + +P +F   +G    GWD G      G  +KL    S G G + +G
Sbjct: 291 KLDSTFIWSKIRPMSFPCVLGMHEVGWDDGTFHSSTGAAQKLGTRPSNG-GTKNSG 345


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,222,942
Number of Sequences: 59808
Number of extensions: 339472
Number of successful extensions: 823
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)