Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30221
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12466| Best HMM Match : Transferrin (HMM E-Value=4.4e-21)           55   4e-08
SB_33226| Best HMM Match : ubiquitin (HMM E-Value=5.6)                 29   3.0  
SB_5632| Best HMM Match : XRN_N (HMM E-Value=3.9)                      29   3.0  
SB_42433| Best HMM Match : zf-CW (HMM E-Value=2.4)                     28   4.0  
SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_12466| Best HMM Match : Transferrin (HMM E-Value=4.4e-21)
          Length = 291

 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 5/139 (3%)
 Frame = +3

Query: 75  NAAKTTYKICVPSQHLKACQDMVDIPTK-----SKVTLDCIPARDRMECLNYVQQRQADF 239
           NA K     C+    ++ CQ +  + ++       V L C+      +C++ +Q+ +AD 
Sbjct: 22  NAPKLGRWCCISDAEVEKCQALAHVASRVVTSNETVNLTCVRGDGVTDCMSRIQRDEADL 81

Query: 240 VPVDPEDMYVAAKIPNQDFVVFQEYRTDEEPDAPFRYEAVIVIHKDLPINNLDQLKGLKS 419
           V +  ED+Y+A        VV ++Y +    D    Y AV ++     + N+  LKG  +
Sbjct: 82  VTLGEEDIYIAGAKYGLRPVVAEDYGS---KDKHIHY-AVALVRSTTTV-NITTLKGAIT 136

Query: 420 CHTGVNRNVGYKIPLTMLM 476
           CH      +G+KIP+  L+
Sbjct: 137 CHPRAEDMIGWKIPVGFLI 155


>SB_33226| Best HMM Match : ubiquitin (HMM E-Value=5.6)
          Length = 211

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +3

Query: 324 EEPDAPFRYEAVIVIHKDLPINNLDQLKGLKSCHTGVNRNVGYKIPLTMLMKR 482
           E+P+ PFRY    ++HK + +    +L      H  + +  G+  P+  L  R
Sbjct: 113 EDPEEPFRYVFDWIVHKGMSVRECKEL-----LHPELQQRYGFNCPVDHLRLR 160


>SB_5632| Best HMM Match : XRN_N (HMM E-Value=3.9)
          Length = 766

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = -1

Query: 330 VLHRFCTPGKRRS-PDWVFWRPRTCLRGQ-LERNRLASAERNSDTPFYL--WRE 181
           +LH  CTPG+RRS   + +  P   +R + L  N     +R S T  +L  W E
Sbjct: 163 LLHNTCTPGQRRSEKKYYYTTPARLVREEVLLHNTCTPGQRRSITTQHLHAWSE 216



 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 330 VLHRFCTPGKRRSPDWVFWRPRTCL 256
           +LH  CTPG+RRS    ++    CL
Sbjct: 628 LLHNTCTPGQRRSEKKYYYTTLACL 652



 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -1

Query: 330 VLHRFCTPGKRRSPDWVFWRPRTCLRGQLERNRLASAE 217
           +LH+ C PG+RRS    ++    CL  + +R  + + +
Sbjct: 678 LLHKTCMPGQRRSEKKYYYTTPACLVREDQRRSIITQQ 715


>SB_42433| Best HMM Match : zf-CW (HMM E-Value=2.4)
          Length = 252

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +3

Query: 177 CIPARDRMECLNYVQQRQADFVPVDPEDMYVAAKIPNQDFVVFQEY 314
           C PA DR EC    + R  D    + +D+YV + I  + +VVF  Y
Sbjct: 94  CWPAMDREECRRNEKYRNCD----EFKDIYVDSCIEVKKWVVFVNY 135


>SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1788

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -1

Query: 315  CTPGKRRSPDWVFWRPRTCLRGQLERNRLASAERNSDTPFYLW 187
            C   + R P     +P T  RG+LER+  A   RN D     W
Sbjct: 1493 CAARELRQPPVEMSKPITLTRGELERDAEADHCRNYDHQCMQW 1535


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,780,614
Number of Sequences: 59808
Number of extensions: 409086
Number of successful extensions: 818
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)