Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30220
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 27 1.7
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 25 5.1
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 25 6.7
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 6.7
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 25 6.7
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p... 25 8.9
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 8.9
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 25 8.9
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting... 25 8.9
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 25 8.9
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -3
Query: 184 LSDTILSNDECEIIGRNELICTILFNLYNVLLTFN*FKT 68
LSDT L+ ++ +I+ + CT L + + LL F+ K+
Sbjct: 1779 LSDTKLNEEQYDIVSTAKQSCTSLVQIIDDLLNFSELKS 1817
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 25.4 bits (53), Expect = 5.1
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = -3
Query: 238 KIHVLNLYKTFVWTDICKLSDTILSNDECEIIGRNELICTILFNLYNVLLT 86
KI L L K + WT+ + + ILSN E E+I N L ++ Y +L+
Sbjct: 889 KISQLALAKLYSWTNRIEGENIILSN-ETEVI-ENHLAILLIQEQYAEMLS 937
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 25.0 bits (52), Expect = 6.7
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 175 YRLVYRCPSTRMFCKGLIHVFLNEFY-KCDTR 267
YR+ R P+T CK I + N FY +C +R
Sbjct: 1753 YRVDIRNPTTGTICKTDIMIMENVFYDECPSR 1784
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.0 bits (52), Expect = 6.7
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = -1
Query: 477 RIFFENTFK--FVSFLSWKNSLKMLVNTYK 394
++ FE + K F SFLSW +S K L NT+K
Sbjct: 601 KLKFEYSLKEIFFSFLSWASSPKGL-NTFK 629
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 25.0 bits (52), Expect = 6.7
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +1
Query: 244 EFYKCDT-RSAHDVLLHGIQVPKICYN 321
+F+ C RS +VLL Q+PK+C N
Sbjct: 1466 KFFMCPLCRSLSNVLLPMPQIPKMCLN 1492
>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 226
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 259 HIYKIHLKIHVLNLYKTFVWTDIC-KLSDTILS 164
++ + L IH+ ++++F WT C +S T +S
Sbjct: 169 YLIYLFLSIHLFYVFQSFPWTYFCLAVSGTCIS 201
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +2
Query: 425 FFHDKKETNLKVFSKNILIKSNK 493
FFHD + N KV N I S +
Sbjct: 164 FFHDSESDNFKVVLSNCAINSKE 186
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -1
Query: 456 FKFVSFLSWKNSL 418
F SFLSWKNSL
Sbjct: 384 FMLESFLSWKNSL 396
>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
complex subunit Apc4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 719
Score = 24.6 bits (51), Expect = 8.9
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -1
Query: 495 NLFDFIRIFFENTFKFVSFLSWKNSLKMLVNT 400
N+F F+ FE F+SW N + NT
Sbjct: 411 NVFSFLNCLFEEKKYMKHFISWLNYAIVEFNT 442
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 24.6 bits (51), Expect = 8.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 414 MLVNTYKDGKADETYDPSAEQKL**YYATI 325
+L NT+ +GK++ T DP++ L Y T+
Sbjct: 263 ILQNTFFNGKSNPTIDPNSSSLLSEKYITL 292
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,993,096
Number of Sequences: 5004
Number of extensions: 39005
Number of successful extensions: 86
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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