Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30220
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27754| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_51072| Best HMM Match : Extensin_2 (HMM E-Value=5.2)                27   6.9  
SB_1942| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.9  
SB_19645| Best HMM Match : Smr (HMM E-Value=8.2)                       27   9.2  
SB_30408| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_27754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = -3

Query: 259 HIYKIHLKIHVLNLYKTFVWTDICKLSDTILSNDECEIIGRNELICTILFNLYNVLL 89
           H+Y   + +HV +LY   V   +  L D +++     +   N L+   + +LYN+L+
Sbjct: 393 HLYNRLVAVHVTHLYNRLVEVHVTHLYDRLVAVHVTHLY--NRLVAVHVTHLYNMLV 447


>SB_51072| Best HMM Match : Extensin_2 (HMM E-Value=5.2)
          Length = 298

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = -2

Query: 446 SLFCHGKIHLKC**ILIRTVKQTRLTTHQQNRNY---NNIMLQLEL*HIFGTCIPWSSTS 276
           S+  H KIHL+     I+++ +  LTT   ++N+   + + L + L +I    +P  +TS
Sbjct: 150 SVSAHRKIHLRTTLFYIQSISEPPLTTFSPSQNHPLLHPVHLSITLYYIQSISVPPPTTS 209


>SB_1942| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +1

Query: 91  VTHYIG*IKLCKLAHFYLLFRIHHLTELYRLVYRCPSTRMFCKGLIH 231
           VTH     +L  + H Y + R++ ++ +Y + +  P TR++    +H
Sbjct: 22  VTHVYPVTRLHPVTHAYHMIRVYPVSRVYPVTHVYPVTRVYPVTRVH 68


>SB_19645| Best HMM Match : Smr (HMM E-Value=8.2)
          Length = 346

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 11/52 (21%)
 Frame = +1

Query: 160 HLTELYRLVYRCPSTR-------MFCKGLIHVFLNEF----YKCDTRSAHDV 282
           H T L  +V+  P T        +F   LI  F+N+F    Y CDT+  +DV
Sbjct: 144 HPTNLLHIVHLLPHTPRGIELRCIFSLALIRRFVNQFNEVPYNCDTKEGNDV 195


>SB_30408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 593

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 235 IHVLNLYKTFVWTDICKLSDTILSNDECEIIGRNEL 128
           IH+ NL++TF     CK +D +   D+ +  G++ L
Sbjct: 111 IHLSNLHRTFQEGHKCKGADVLFVEDQAKRYGQSGL 146


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,961,194
Number of Sequences: 59808
Number of extensions: 276805
Number of successful extensions: 522
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)