Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30220
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   3.3  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    22   3.3  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   10.0 

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 245 NFINVTLGPLMMYYSTEYKFQKYATILI 328
           N +NV  GP++   S  Y+ Q+Y  + +
Sbjct: 647 NPLNVPYGPVIPEQSLTYQDQQYQVVSV 674


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 194 VRPHECFVKV*YMYF*MNFIN 256
           V+ H CF  +  +YF M ++N
Sbjct: 48  VQLHSCFQTMDRLYFVMEYVN 68


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +2

Query: 407 TNILSEFFHDKKETNLKVFSKNILIKS 487
           TNI  E F  K +    VF  NIL  S
Sbjct: 260 TNIQLEHFEMKIKRKHNVFVNNILAAS 286


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,246
Number of Sequences: 438
Number of extensions: 2891
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)