Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30220
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ...    29   1.9  
At3g25040.1 68416.m03129 ER lumen protein retaining receptor, pu...    28   4.3  
At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEME...    27   5.7  

>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
           zinc dependent protease [Arabidopsis thaliana]
           GI:7650138; contains Pfam profile PF00004: ATPase AAA
           family
          Length = 855

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 8/41 (19%), Positives = 27/41 (65%)
 Frame = -1

Query: 507 NYLLNLFDFIRIFFENTFKFVSFLSWKNSLKMLVNTYKDGK 385
           ++ +N  DF+++   N+ +++ + ++  ++ +++  YKDG+
Sbjct: 145 SHRINFSDFMKLLDSNSVQYMEYSNYGQTISVILPYYKDGE 185


>At3g25040.1 68416.m03129 ER lumen protein retaining receptor,
           putative / HDEL receptor, putative similar to SP|P35402
           ER lumen protein retaining receptor (HDEL receptor)
           {Arabidopsis thaliana}; contains Pfam profile PF00810:
           ER lumen protein retaining receptor
          Length = 215

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -1

Query: 516 YFINYLLNLFDFIRIFFENTFKFVSFLSWKNSLKM 412
           +F++++  +  F++      F +  FLSWKN+ K+
Sbjct: 177 HFVHWITWIAGFVQTLLYADFFYYYFLSWKNNKKL 211


>At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEMETER
            protein [Arabidopsis thaliana] GI:21743571; contains Pfam
            profile PF00730: HhH-GPD superfamily base excision DNA
            repair protein
          Length = 1729

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
 Frame = -3

Query: 241  LKIHVLNLY------KTFVWTDICKLSDTILSNDECEIIGRNELICT 119
            L++H+L LY      + F+W  +CKL    L     ++I   ++ CT
Sbjct: 1326 LQLHLLELYPVLESIQKFLWPRLCKLDQRTLYELHYQLITFGKVFCT 1372


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,671,414
Number of Sequences: 28952
Number of extensions: 180499
Number of successful extensions: 397
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)