Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30219
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    31   0.14 
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    26   3.8  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    25   5.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   6.7  
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    25   8.9  

>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = -2

Query: 437  IGFVNEVVVFLVNAILSCGFRINEAILHLCYVNFLQHFHIHKHFRVY 297
            I  + + V  +++A++  G   + ++L  C+VN   H   H+  R+Y
Sbjct: 917  IHVIEQTVKTVISALIRLGKDFDSSLLVSCFVNAFPHIPQHRRLRLY 963


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
            Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 358  KMASLILKPQLSMAFTRKTTTSFTKPIILTPFYTIMKN 471
            ++A+   +P +   F  K T   TKPI++   + IMK+
Sbjct: 949  RLAASYGQPIIFQKFKEKLTHKGTKPIVVLNIFQIMKS 986


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +3

Query: 210 NQGQFL-YAFYIAVIQRSDCHG 272
           N G FL YAF+  VI+  D HG
Sbjct: 274 NSGSFLAYAFFSGVIEIYDSHG 295


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 285 APYEVYPKMFMNMEVLQKIYVTKMQDGLINPEAAAKYGIHKEN 413
           A  + Y K+   ME +Q      +Q GL+N  + +   +H+ N
Sbjct: 615 AQIQAYNKLQSQMEHVQNSNEQHLQPGLLNKVSKSFDSVHRRN 657


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = -2

Query: 488 EVCQPLFFIIV*NGVRIIGFVNEVVVFLVNAILSCGFRINEAILHLCYVNFLQHFHIHKH 309
           + C P+F++IV    R+I  V + V      +L+ G R  + I+  C   +   +++   
Sbjct: 114 DACFPIFWVIVFTAFRVI--VMDYV--FRPFVLNWGVRNRKVIIRFCEQGYSFFYYLCFW 169

Query: 308 F-RVYFIRSRN 279
           F  +Y  RS N
Sbjct: 170 FLGLYIYRSSN 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,058,371
Number of Sequences: 5004
Number of extensions: 40490
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)