Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30219
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 30 0.85
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 30 0.85
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 30 0.85
Z74041-8|CAA98519.2| 610|Caenorhabditis elegans Hypothetical pr... 30 1.1
U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein. 30 1.1
U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein ... 30 1.1
DQ482732-1|ABF20555.1| 610|Caenorhabditis elegans SNF-11 protein. 30 1.1
AY529124-1|AAT02634.1| 610|Caenorhabditis elegans GABA transpor... 30 1.1
Z67995-2|CAA91944.2| 458|Caenorhabditis elegans Hypothetical pr... 28 4.6
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family... 27 8.0
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 30.3 bits (65), Expect = 0.85
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 366 LINPEAAAKYGIHKENDYFVYKANYSNAVLYNNEE 470
+++P IHKE F YK+N A+LY E
Sbjct: 227 VLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRE 261
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 30.3 bits (65), Expect = 0.85
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 366 LINPEAAAKYGIHKENDYFVYKANYSNAVLYNNEE 470
+++P IHKE F YK+N A+LY E
Sbjct: 211 VLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRE 245
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 30.3 bits (65), Expect = 0.85
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 366 LINPEAAAKYGIHKENDYFVYKANYSNAVLYNNEE 470
+++P IHKE F YK+N A+LY E
Sbjct: 208 VLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRE 242
>Z74041-8|CAA98519.2| 610|Caenorhabditis elegans Hypothetical
protein T03F7.1 protein.
Length = 610
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -2
Query: 371 NEAILHLCYVNFLQHFHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 222
N I V L H HIH++ + +F+ + N TV A D S V ++E
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200
>U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein.
Length = 803
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 81 KNLEFSVFYDKMRDEAIALFHLFYYAKDFETFYKTACFARVHLNQ 215
KN+ D+M DEAI LF FE +YK R+ L +
Sbjct: 455 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 499
>U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein 4
protein.
Length = 840
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 81 KNLEFSVFYDKMRDEAIALFHLFYYAKDFETFYKTACFARVHLNQ 215
KN+ D+M DEAI LF FE +YK R+ L +
Sbjct: 492 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 536
>DQ482732-1|ABF20555.1| 610|Caenorhabditis elegans SNF-11 protein.
Length = 610
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -2
Query: 371 NEAILHLCYVNFLQHFHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 222
N I V L H HIH++ + +F+ + N TV A D S V ++E
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200
>AY529124-1|AAT02634.1| 610|Caenorhabditis elegans GABA transporter
protein protein.
Length = 610
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -2
Query: 371 NEAILHLCYVNFLQHFHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 222
N I V L H HIH++ + +F+ + N TV A D S V ++E
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200
>Z67995-2|CAA91944.2| 458|Caenorhabditis elegans Hypothetical
protein M153.2 protein.
Length = 458
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 401 NAILSCGFRINEAILHLCYVNFLQHFHIHK 312
+AI+ CG ++ + LCY+NF Q + K
Sbjct: 295 DAIILCGTIVHLVVYALCYINFPQDSSLKK 324
>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
protein 3 protein.
Length = 3343
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -2
Query: 356 HLCYVNFLQHFHIHKHFRVYFIRSRNNETVAIRALDNSDV 237
H+ ++ +L H H KHF V+ +TV++R D ++
Sbjct: 1929 HVAFMEYLFHPHSRKHFPVFV---EKLDTVSVREHDEQEL 1965
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,216,616
Number of Sequences: 27780
Number of extensions: 223584
Number of successful extensions: 557
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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