Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30218
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    29   0.31 
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    27   1.3  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   2.9  
SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|...    26   3.8  
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    25   5.1  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    25   6.7  
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    25   6.7  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    25   6.7  

>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +2

Query: 143 FFEDIDVKKFAFSTVFSHAHMPKLTKDNYRIYILKVYNDD 262
           FF    +K+   S +    H+PKL +D++  Y+++   D+
Sbjct: 583 FFAPAAIKEKLISELMDEKHLPKLLRDSFANYVIQTALDN 622


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +2

Query: 296 YIVVVSEYLKIHDYCKGFEVILDYSDVNVMNFVTKFNPVILRQAVTLITDGY 451
           Y++VV   L + DY   F  +L Y   ++   VT   P  +R+ + +  DG+
Sbjct: 271 YVIVVEHDLSVLDYLSDFVCVL-YGVPSMYGVVTL--PYSVREGINIFLDGH 319


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +2

Query: 146 FEDIDVKKFA-FSTVFSHAHMPKLTKDNYRIYILKVYNDDFDASLVLDYYKYIVVVSEYL 322
           F D ++     F   F H   P   K  + +  L+++ + F+  L L + KY+V++   L
Sbjct: 785 FTDFEINSILNFFFCFLHTVEPS-GKLTFELAFLEIFYELFNCLLHLQFSKYLVIIGTLL 843

Query: 323 KIHDYCKGF 349
                  GF
Sbjct: 844 SDKYMTLGF 852


>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 228 TEYIY*KFTTMILTLPSSWTITSTLW 305
           TEYI      + L  P+S+TI++ LW
Sbjct: 95  TEYILGGCAVLALIYPTSYTISNILW 120


>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 510 RIKSTVFDGDIM*TPLILMP*PSVIN 433
           R+ S + DG I+  P+ L+P PSV N
Sbjct: 143 RLDSRLPDGGIIAKPVALLPTPSVAN 168


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 380  HSRRCSQVLLQNLCSNHEF*GIRSQPQCTCNSPGRGKRQ 264
            H  R  + LL  L  +H+  GI+S P  + N   + K+Q
Sbjct: 1186 HLVRRGEYLLSALREHHQNFGIKSSPAISTNGKTQPKKQ 1224


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 233 IYILKVYNDDFDASLVLDYYKYIV 304
           IY+ KV+    D SL+  Y +Y +
Sbjct: 266 IYVAKVFRPPLDTSLLRRYVRYFI 289


>SPCC1322.12c |bub1||serine/threonine protein kinase
            Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 24/109 (22%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
 Frame = +2

Query: 191  SHAHMPKLTKDNYRIYILKVYNDDFDASLVLDYYKYIVVVSEYLKIHDYCKGFEVILDYS 370
            SH  M    + +    +  ++N  F +S  +D    +    E+L+I +     ++I  + 
Sbjct: 804  SHLLMDYRPQGSILDLVNSMHNSTFSSS-GMDEILVVFFSIEFLRIIEALHTHKII--HG 860

Query: 371  DVNVMNFVTKFNPVILRQAVTLIT-DG-YGMRIKGVYIISPSKTVDLIL 511
            D+   N + +   V   +   + + +G YG   KG+Y+I   + +DL L
Sbjct: 861  DLKADNALLRLETVADSEWSPIYSPEGLYGWSFKGIYLIDFGRGIDLSL 909


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,223,984
Number of Sequences: 5004
Number of extensions: 46516
Number of successful extensions: 124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)