Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30218
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30326| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_56206| Best HMM Match : Troponin (HMM E-Value=6.7)                  27   9.2  
SB_37097| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_23591| Best HMM Match : PAN (HMM E-Value=5.9e-07)                   27   9.2  

>SB_30326| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1346

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 148 EEIRHQRFKRAQIIDTCFGSFHKTFRCYKRALQ 50
           E  R Q   R  IIDTC+GS +  +   K AL+
Sbjct: 652 ETQRLQNCSRRLIIDTCYGSLYVVYPKLKDALE 684


>SB_56206| Best HMM Match : Troponin (HMM E-Value=6.7)
          Length = 213

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 299 IVVVSEYLKIHDYCKGFEVILDY 367
           +V   E  KIH YC+ FE+  DY
Sbjct: 97  VVWACERFKIHVYCREFELETDY 119


>SB_37097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 726

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -2

Query: 347 NLCSNHEF*GIRSQPQCTCNSPGRGKRQNHRCKLLIYIFG 228
           N   N EF GI S P      PGR +   +  +L I +FG
Sbjct: 269 NRSQNPEFPGIPSTPTQPRTQPGRPQLPTYSTQLPIVLFG 308


>SB_23591| Best HMM Match : PAN (HMM E-Value=5.9e-07)
          Length = 336

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +2

Query: 5   KKQNHFLKKDFSREYLERTLITTKGLVE-RAKTRIDNLCTFKTLMPNF 145
           K  NHF   DFSRE+L+      K  V    KT + N    +   P F
Sbjct: 286 KYSNHFCNLDFSREHLKEQKKKKKDWVPCGKKTEVTNRKLLRLPHPQF 333


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,228,033
Number of Sequences: 59808
Number of extensions: 337177
Number of successful extensions: 732
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)