Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30218
         (516 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z97053-6|CAI19686.1|  342|Homo sapiens chromosome 20 open readin...    35   0.15 
BC003071-1|AAH03071.2|  342|Homo sapiens chromosome 20 open read...    35   0.15 
AL132772-9|CAI18861.1|  342|Homo sapiens chromosome 20 open read...    35   0.15 
AF030339-1|AAC18823.1| 1568|Homo sapiens VESPR protein.                31   3.2  
AB208934-1|BAD92171.1| 1211|Homo sapiens plexin C1 variant protein.    31   3.2  

>Z97053-6|CAI19686.1|  342|Homo sapiens chromosome 20 open reading
           frame 121 protein.
          Length = 342

 Score = 35.1 bits (77), Expect = 0.15
 Identities = 13/47 (27%), Positives = 29/47 (61%)
 Frame = +2

Query: 344 GFEVILDYSDVNVMNFVTKFNPVILRQAVTLITDGYGMRIKGVYIIS 484
           G  ++ DY  V++    + F P I ++ + ++ DG+ +RIK V++++
Sbjct: 182 GIVILADYKGVSLSK-ASHFGPFIAKKVIGILQDGFPIRIKAVHVVN 227


>BC003071-1|AAH03071.2|  342|Homo sapiens chromosome 20 open reading
           frame 121 protein.
          Length = 342

 Score = 35.1 bits (77), Expect = 0.15
 Identities = 13/47 (27%), Positives = 29/47 (61%)
 Frame = +2

Query: 344 GFEVILDYSDVNVMNFVTKFNPVILRQAVTLITDGYGMRIKGVYIIS 484
           G  ++ DY  V++    + F P I ++ + ++ DG+ +RIK V++++
Sbjct: 182 GIVILADYKGVSLSK-ASHFGPFIAKKVIGILQDGFPIRIKAVHVVN 227


>AL132772-9|CAI18861.1|  342|Homo sapiens chromosome 20 open reading
           frame 121 protein.
          Length = 342

 Score = 35.1 bits (77), Expect = 0.15
 Identities = 13/47 (27%), Positives = 29/47 (61%)
 Frame = +2

Query: 344 GFEVILDYSDVNVMNFVTKFNPVILRQAVTLITDGYGMRIKGVYIIS 484
           G  ++ DY  V++    + F P I ++ + ++ DG+ +RIK V++++
Sbjct: 182 GIVILADYKGVSLSK-ASHFGPFIAKKVIGILQDGFPIRIKAVHVVN 227


>AF030339-1|AAC18823.1| 1568|Homo sapiens VESPR protein.
          Length = 1568

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
 Frame = -2

Query: 377 SRRCSQVLLQNLCSNHEF*GIRSQPQ--CTCNSPGRGKRQNHRCKLLIYIFGSYPWSVS 207
           S R S+ +++N+ S+ E    +SQP   CTC+ P R   ++     +++ FGS  W++S
Sbjct: 528 SPRHSKCMVKNVDSSRELCQNKSQPNRTCTCSIPTRATYKDVSVVNVMFSFGS--WNLS 584


>AB208934-1|BAD92171.1| 1211|Homo sapiens plexin C1 variant protein.
          Length = 1211

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
 Frame = -2

Query: 377 SRRCSQVLLQNLCSNHEF*GIRSQPQ--CTCNSPGRGKRQNHRCKLLIYIFGSYPWSVS 207
           S R S+ +++N+ S+ E    +SQP   CTC+ P R   ++     +++ FGS  W++S
Sbjct: 171 SPRHSKCMVKNVDSSRELCQNKSQPNRTCTCSIPTRATYKDVSVVNVMFSFGS--WNLS 227


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,673,733
Number of Sequences: 237096
Number of extensions: 1468801
Number of successful extensions: 6348
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6346
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4876707572
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)