Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30218
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    25   0.35 
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   2.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.5  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   10.0 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   10.0 

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 25.4 bits (53), Expect = 0.35
 Identities = 10/18 (55%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = +2

Query: 290 YKYIV-VVSEYLKIHDYC 340
           YKYI  ++ ++LKIHD C
Sbjct: 312 YKYITPLIQKHLKIHDTC 329


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 12/55 (21%), Positives = 26/55 (47%)
 Frame = +2

Query: 80  LVERAKTRIDNLCTFKTLMPNFFEDIDVKKFAFSTVFSHAHMPKLTKDNYRIYIL 244
           ++ R  T++  L     +MP+ + + +V + A++         K T +N   Y+L
Sbjct: 146 VIHRPDTKLMKLPPMYEVMPHLYFNDEVMQKAYNIAMGDTADMKKTYNNIDYYLL 200


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 12/55 (21%), Positives = 26/55 (47%)
 Frame = +2

Query: 80  LVERAKTRIDNLCTFKTLMPNFFEDIDVKKFAFSTVFSHAHMPKLTKDNYRIYIL 244
           ++ R  T++  L     +MP+ + + +V + A++         K T +N   Y+L
Sbjct: 146 VIHRPDTKLMKLPPMYEVMPHLYFNDEVMQKAYNIAMGDTADMKKTYNNIDYYLL 200


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +2

Query: 5   KKQNHFLKKDFSREYLERTLITTKGLVERAKTR 103
           ++QN +  +   R+Y ER+   ++   ER ++R
Sbjct: 278 REQNSYKNEREYRKYRERSKERSRDRTERERSR 310


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 153 SSKKFGISVLNVHKLSIRVLARSTRPF 73
           +SK FGI    ++K++ R   R   PF
Sbjct: 487 ASKAFGIPSSTLYKIARREGIRLAAPF 513


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,124
Number of Sequences: 438
Number of extensions: 3547
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)