Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30216
(505 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 109 3e-25
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.52
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 28 0.92
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 27 1.6
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe... 25 4.9
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 6.5
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 25 6.5
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 25 6.5
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po... 25 8.5
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 25 8.5
SPAC5D6.04 |||auxin family transmembrane transporter |Schizosacc... 25 8.5
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch... 25 8.5
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 109 bits (261), Expect = 3e-25
Identities = 63/170 (37%), Positives = 91/170 (53%), Gaps = 5/170 (2%)
Frame = +3
Query: 9 HNEVDEPMFTQPLMYQKIRKTKPVLEKYADQLIAEGVVTAXXXXXXXXXXXXICEDAYNQ 188
HNE D+P FTQP MY+ I K P + Y QL+ E V+ I E ++
Sbjct: 506 HNETDQPSFTQPRMYKAIAKHPPTFKIYTQQLLQEKTVSKAEVDAQEKRVWDILESSFES 565
Query: 189 AKQETHIKYKDWLDSPWSGFFEGKD----PLKMSATGVVEETLVHIGRRFSSPPPNAAEF 356
+K +++WL +PW GF KD L TGV +TL IG+ + P F
Sbjct: 566 SKNYKS-DHREWLSNPWVGFASPKDLMTKILPSYPTGVNIDTLKQIGKALYTLPEG---F 621
Query: 357 EIHKGLLRILKSRMEMVDN-RTVDWALAEAMAYGSLLKEGIHVRLSGEDV 503
+ H+ L RIL +R + + + +D AEA+A+G+LL+EG HVR+SG+DV
Sbjct: 622 DAHRNLKRILNNRNKSISSGEGIDMPTAEALAFGTLLEEGHHVRVSGQDV 671
>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 28.7 bits (61), Expect = 0.52
Identities = 21/64 (32%), Positives = 28/64 (43%)
Frame = +2
Query: 290 SGGDPRAHRASVLIPPSQRRGVRDPQGAASYPEVAHGDGRQPYSGLGARGGDGLRISAQG 469
+G R HRA PP R + P+ + HG P+ G G RGG R+ +G
Sbjct: 86 AGSVLRGHRA-YYAPPPPRGPLFGPRIGGGHHGPLHG----PHGGFGGRGGG--RMGGRG 138
Query: 470 GHPR 481
G R
Sbjct: 139 GRGR 142
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.9 bits (59), Expect = 0.92
Identities = 22/75 (29%), Positives = 33/75 (44%)
Frame = -1
Query: 502 TSSPERRTWMPSLSRDP*AIASASAQSTVRLSTISMRDFRIRSSPLWISNSAALGGGDEN 323
TSS +W S DP ASA+ ST ++T S+ SS ++ ++A +
Sbjct: 948 TSSSSASSWSSSSEVDPSTAASATGSSTSSIATASVSG----SSTSSVATASATDSSTSS 1003
Query: 322 RRPMCTRVSSTTPVA 278
SST+ VA
Sbjct: 1004 IAAASVTGSSTSSVA 1018
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1115
Score = 27.1 bits (57), Expect = 1.6
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +3
Query: 270 KMSATGVVEETLVHI---GRRFSSPPPNAAEFEI 362
K+ + G +EETL +I GRRF PP+ A +
Sbjct: 1065 KLKSQGKLEETLDNIYEVGRRFKFRPPSVASMSL 1098
>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 746
Score = 25.4 bits (53), Expect = 4.9
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 1 KRXTTKLTSRCSLSPSCTRRFV-RPNQYWRNTR 96
+R TT+L + SLSP C +F+ + + NTR
Sbjct: 595 QRATTELINNLSLSPYCLIKFIGDKDSDFENTR 627
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.0 bits (52), Expect = 6.5
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -1
Query: 256 PSKKPDQGESSQSLYLMWVSCLAWLYASSQI 164
P D E LYL W + ++ YASS +
Sbjct: 1008 PLSNCDFNEQKHELYLSWRTNASFFYASSSL 1038
>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1473
Score = 25.0 bits (52), Expect = 6.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 333 PPPNAAEFEIHKGLLRILKSRMEMVDN 413
P P + E HK L R+ KSR+ +V++
Sbjct: 393 PTPPSIEEAYHKLLHRVFKSRLNIVND 419
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 25.0 bits (52), Expect = 6.5
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +3
Query: 234 PWSGFFEGKDPLKMSATGVVEETLVHIGRRFSSPPPNAAEFEIHKGLLRILKSRM 398
P S + + + S + V+E+ ++ + +SP N+ EFE L R +S++
Sbjct: 864 PESRYNQNMQSMSDSKSVVIEDYMLMEALKKNSPSLNSEEFEHLSNLYRDFRSKL 918
>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 942
Score = 24.6 bits (51), Expect = 8.5
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -1
Query: 412 LSTISMRDFRIRSSPLWISNSAALGGGDENRRPMCTRVSSTTPVAD 275
L + D + S+P S A+ G NR+P+ V T VAD
Sbjct: 495 LQGVDAVDAVLASTPDTPSPMIAINGNKINRKPLMEAVKLTHEVAD 540
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 24.6 bits (51), Expect = 8.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 31 CSLSPSCTRRFVRPNQYWRNTRT 99
CS PSC +RF R ++ R+ RT
Sbjct: 34 CSY-PSCKKRFTRRDELIRHVRT 55
>SPAC5D6.04 |||auxin family transmembrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 24.6 bits (51), Expect = 8.5
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Frame = -1
Query: 331 DENRRPMCTRVSSTTPVADIFRGSFPSKKPDQGESSQSLYLMWVS----CLAWLY 179
+ N P+ S T V D+ P PD+ S +YL+ S L W Y
Sbjct: 122 NSNSLPLALVSSLATTVKDLLWDKIPDDTPDKVASRGIMYLLIFSQLGQALRWSY 176
>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 703
Score = 24.6 bits (51), Expect = 8.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 324 FSSPPPNAAEFEIHKGLLRILKSRMEMVDNRTVDWALAE 440
FS P + IHK L + KSR+ V++ +D L++
Sbjct: 354 FSFRPGAVYTYLIHKSLNILAKSRLVEVEHEILDTLLSQ 392
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,922,902
Number of Sequences: 5004
Number of extensions: 34412
Number of successful extensions: 119
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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