Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30216
         (505 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25552| Best HMM Match : Transket_pyr (HMM E-Value=1.6e-05)          78   4e-15
SB_36200| Best HMM Match : E1_dh (HMM E-Value=5.1e-40)                 52   4e-07
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_6855| Best HMM Match : MSF1 (HMM E-Value=1.6e-10)                   30   1.2  
SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)                 29   1.6  
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_10487| Best HMM Match : FGF (HMM E-Value=1.4e-06)                   28   5.0  
SB_8067| Best HMM Match : TSP_1 (HMM E-Value=1.1e-22)                  28   5.0  
SB_42843| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_48417| Best HMM Match : DUF646 (HMM E-Value=8.6)                    27   6.6  
SB_54936| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_57257| Best HMM Match : NUC153 (HMM E-Value=1.2e-15)                27   8.8  
SB_40648| Best HMM Match : DUF646 (HMM E-Value=6.9)                    27   8.8  
SB_30489| Best HMM Match : HEAT (HMM E-Value=9.2e-17)                  27   8.8  
SB_14407| Best HMM Match : DUF646 (HMM E-Value=5)                      27   8.8  
SB_32226| Best HMM Match : PID (HMM E-Value=3.9e-30)                   27   8.8  
SB_16321| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_25552| Best HMM Match : Transket_pyr (HMM E-Value=1.6e-05)
          Length = 405

 Score = 78.2 bits (184), Expect = 4e-15
 Identities = 35/66 (53%), Positives = 49/66 (74%)
 Frame = +3

Query: 282 TGVVEETLVHIGRRFSSPPPNAAEFEIHKGLLRILKSRMEMVDNRTVDWALAEAMAYGSL 461
           TG+  + + HIG+ FS+PP    +F+IH GL RILK+R +++ N  VDWA+ EA+A+GSL
Sbjct: 15  TGITLDRIKHIGKTFSTPPDG--DFKIHGGLRRILKARADLLSNGYVDWAMGEALAFGSL 72

Query: 462 LKEGIH 479
           L EGIH
Sbjct: 73  LMEGIH 78


>SB_36200| Best HMM Match : E1_dh (HMM E-Value=5.1e-40)
          Length = 382

 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 25/85 (29%), Positives = 44/85 (51%)
 Frame = +3

Query: 9   HNEVDEPMFTQPLMYQKIRKTKPVLEKYADQLIAEGVVTAXXXXXXXXXXXXICEDAYNQ 188
           HNE DEP FTQP++Y+ I K K   + YA++L A GV+ A              ++   +
Sbjct: 292 HNEGDEPKFTQPILYKTIAKHKNARDIYAEKLKAAGVIDANYVKELEEKYKSDLDENLEE 351

Query: 189 AKQETHIKYKDWLDSPWSGFFEGKD 263
           ++++       ++ + W+GF +  D
Sbjct: 352 SRKKDLTVITPFMQNEWTGFEQVSD 376


>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 610

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
 Frame = +2

Query: 263 PPKDVGHRCSGGDPRAHRASVLIPPSQRRGVRDPQGAASYPEVAH---GDGRQPYSGLGA 433
           PP+  G    GG  R  R     P  ++ G  +PQG   YPE       +G+Q Y G G 
Sbjct: 523 PPRGRGGGDFGG--RGGRGGTT-PGKRKYGADNPQGVVGYPEPKKRFMAEGQQDYQGGGG 579

Query: 434 RG 439
            G
Sbjct: 580 WG 581


>SB_6855| Best HMM Match : MSF1 (HMM E-Value=1.6e-10)
          Length = 289

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +3

Query: 45  LMYQKIRKTKPVLEKYADQLIAEGV 119
           L  Q I+K K V++ Y D+LI+EGV
Sbjct: 67  LYLQNIKKGKEVIQYYIDELISEGV 91


>SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)
          Length = 1227

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = +3

Query: 237  WSGFFEGKD--PLKMSATGVVEETLVHIGRR-FSSPPPNAAEFEIHKGLLRILKSRMEMV 407
            W+GF + +   P+ + A   V    +H     F  PPP+A   + H  +LR +  R + +
Sbjct: 825  WAGFPQSETSYPVMLRAALYVHAPDLHEATNGFPPPPPHALTSQTHCDVLRYVLQRFDAL 884

Query: 408  DNRTVD 425
               TVD
Sbjct: 885  SWLTVD 890


>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2680

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = -2

Query: 417 YGCRPSPCATSGYEAAPCGSRTPRRWE---GGMRTDARCARGS 298
           YGC P  C  SG  A  C S    + +   GG R D RC  GS
Sbjct: 820 YGCSPCNCDASGSLATNCNSTGYCQCKPNIGGRRCD-RCMPGS 861


>SB_10487| Best HMM Match : FGF (HMM E-Value=1.4e-06)
          Length = 617

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -1

Query: 331 DENRRPMCTRVSSTT 287
           D++RRP CTRV +TT
Sbjct: 345 DQSRRPKCTRVKTTT 359


>SB_8067| Best HMM Match : TSP_1 (HMM E-Value=1.1e-22)
          Length = 869

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -1

Query: 376 SSPLWISNSAALGGGDENRRPMCTRVSSTTPVADIF 269
           S+ +W   S A G G + R   C R    T VAD F
Sbjct: 506 STGIWSECSFACGPGSQGRHVSCMRSDDGTYVADSF 541


>SB_42843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 269 KDVG-HRCSGGDPRAHRASVLIPPSQR 346
           K VG H  +GG PR H A+  +PP ++
Sbjct: 280 KPVGAHNMAGGHPRVHHATDHVPPRRQ 306


>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1572

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 20/74 (27%), Positives = 30/74 (40%)
 Frame = +2

Query: 263  PPKDVGHRCSGGDPRAHRASVLIPPSQRRGVRDPQGAASYPEVAHGDGRQPYSGLGARGG 442
            PP       S   PR  R   L   S++  V + +   S  E +H   ++  SG G+   
Sbjct: 1301 PPSPTLEPASNRKPRGRRLKSLTQSSEQANVTESEQGVSDSEPSH--AKESASGRGSVQA 1358

Query: 443  DGLRISAQGGHPRA 484
               R S++   PRA
Sbjct: 1359 KKRRTSSRSVPPRA 1372


>SB_48417| Best HMM Match : DUF646 (HMM E-Value=8.6)
          Length = 623

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 269 KDVG-HRCSGGDPRAHRASVLIPPSQR 346
           K VG H  +GG PR H A+  +PP ++
Sbjct: 575 KPVGAHNMAGGHPRLHHATDHVPPRRQ 601


>SB_54936| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = -1

Query: 418 VRLSTISMRDFRIRS-SPLWISNSAALGGGDE-NRRPMCTRVSSTTPVADIFRGSFPSKK 245
           + LS  S  D R  S +P  +S  A L    E N RP C  V+ T P    F+G   + K
Sbjct: 59  ILLSVSSDGDLRAWSLNPDDLSEQALLLARYEMNGRPTCMTVAVTRPKPTPFKGQEETPK 118

Query: 244 PDQGESSQS 218
           P+     ++
Sbjct: 119 PESNSDRRT 127


>SB_57257| Best HMM Match : NUC153 (HMM E-Value=1.2e-15)
          Length = 392

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 455 SVGHRLRERPVHCTVVDHLHARLQDTKQP 369
           S GH L   P  C+ +D+L   L++ +QP
Sbjct: 70  STGHTLGPAPRWCSFLDNLTEELEEDEQP 98


>SB_40648| Best HMM Match : DUF646 (HMM E-Value=6.9)
          Length = 218

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +2

Query: 269 KDVG-HRCSGGDPRAHRASVLIPPSQRRGVR--DPQGAASYPEVAHGDGRQPYS 421
           K VG H  +GG PR   A+  +PP ++        +GAA+ P++    G  P S
Sbjct: 86  KPVGAHNMAGGHPRVQHATDHVPPRRQSAPAKVHAEGAAA-PDLGRPPGAVPAS 138


>SB_30489| Best HMM Match : HEAT (HMM E-Value=9.2e-17)
          Length = 722

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/47 (23%), Positives = 26/47 (55%)
 Frame = -1

Query: 358 SNSAALGGGDENRRPMCTRVSSTTPVADIFRGSFPSKKPDQGESSQS 218
           S+S+++GG      P  + +++   +A+  + +  + KPD+  S+ S
Sbjct: 533 SSSSSIGGTVRKNSPSASSLAARVSIANAAKSNSKNTKPDRSNSTGS 579


>SB_14407| Best HMM Match : DUF646 (HMM E-Value=5)
          Length = 214

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +2

Query: 269 KDVG-HRCSGGDPRAHRASVLIPPSQRRGVR--DPQGAASYPEVAHGDGRQPYS 421
           K VG H  +GG PR   A+  +PP ++        +GAA+ P++    G  P S
Sbjct: 127 KPVGAHNMAGGHPRVQHATDHVPPRRQSATAKVHAEGAAA-PDLGRLPGAVPAS 179


>SB_32226| Best HMM Match : PID (HMM E-Value=3.9e-30)
          Length = 591

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 20/67 (29%), Positives = 34/67 (50%)
 Frame = -1

Query: 442 ASASAQSTVRLSTISMRDFRIRSSPLWISNSAALGGGDENRRPMCTRVSSTTPVADIFRG 263
           A+++A STV     S R F   S+P  +++++++  G      M +  SST PV    + 
Sbjct: 263 ATSTAPSTVANQQQSSRAFV--STPSSVTSASSVVNGPTETSGMTSSPSSTAPVVTTTQQ 320

Query: 262 SFPSKKP 242
             P+ KP
Sbjct: 321 VPPALKP 327


>SB_16321| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = -1

Query: 322 RRPMCTRVSSTTPVADIFRGSFP-SKKPDQG-ESSQSLYLMWVSCLAWLYASS 170
           RR    + S+        RG  P +K   QG E SQSLY  W S  AW   SS
Sbjct: 11  RRSGFLKASNVISTCATLRGKHPHAKDKRQGAERSQSLY--WESSSAWFDISS 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,471,199
Number of Sequences: 59808
Number of extensions: 304108
Number of successful extensions: 984
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)