Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30215
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   220   1e-58
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...   133   2e-32
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...   129   2e-31
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    88   8e-19
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    60   1e-10
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    53   2e-08
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    46   3e-06
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    46   3e-06
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    32   0.059
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom...    27   2.2  
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar...    25   6.7  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   6.7  
SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.9  
SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces pombe...    25   8.9  
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc...    25   8.9  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  220 bits (537), Expect = 1e-58
 Identities = 106/124 (85%), Positives = 115/124 (92%)
 Frame = +2

Query: 68  IMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 247
           I+FETFN+PA YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLA
Sbjct: 122 IIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLA 181

Query: 248 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLRKLVG 427
           GRDLTDYLMKIL ERGY+F+TTAEREIVRDIKEKLCYVALDFEQE+ TAA S+SL K   
Sbjct: 182 GRDLTDYLMKILMERGYTFSTTAEREIVRDIKEKLCYVALDFEQELQTAAQSSSLEKSYE 241

Query: 428 LLEG 439
           L +G
Sbjct: 242 LPDG 245



 Score = 35.1 bits (77), Expect = 0.006
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +3

Query: 3   HPVLLTEAPLNPKANR 50
           HP LLTEAPLNPK+NR
Sbjct: 101 HPCLLTEAPLNPKSNR 116


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score =  133 bits (321), Expect = 2e-32
 Identities = 63/123 (51%), Positives = 86/123 (69%)
 Frame = +2

Query: 71  MFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 250
           MFE +    +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE   L H + RLD+AG
Sbjct: 123 MFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAG 182

Query: 251 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLRKLVGL 430
           RD T YL+ +L  +GY+F  TA+ E VR++KEKLCYV+ D E +   +  +T L +   L
Sbjct: 183 RDATRYLISLLLRKGYAFNRTADFETVREMKEKLCYVSYDLELDHKLSEETTVLMRNYTL 242

Query: 431 LEG 439
            +G
Sbjct: 243 PDG 245



 Score = 26.2 bits (55), Expect = 2.9
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +3

Query: 9   VLLTEAPLNPKANR 50
           +LLTE P+NP ANR
Sbjct: 103 ILLTEPPMNPVANR 116


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score =  129 bits (312), Expect = 2e-31
 Identities = 57/104 (54%), Positives = 81/104 (77%)
 Frame = +2

Query: 74  FETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 253
           +ET N PA+  ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GR
Sbjct: 129 YETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGR 188

Query: 254 DLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM 385
           D+TDYL   L + G+   ++AE+EIVR+IKEK CYVA DF  E+
Sbjct: 189 DVTDYLQLQLRKSGHELVSSAEKEIVREIKEKCCYVASDFRSEI 232


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 87.8 bits (208), Expect = 8e-19
 Identities = 51/117 (43%), Positives = 72/117 (61%), Gaps = 10/117 (8%)
 Frame = +2

Query: 68  IMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPH 223
           IMFE+FN   +Y+A+QAVL+L AS  +        TG V+DSGDGV+H +P+ EGY +  
Sbjct: 145 IMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGS 204

Query: 224 AILRLDLAGRDLTDYLMKILTERGY--SFTTTAEREIVRDIKEKLCYVALDFEQEMA 388
           +I  + LAGRD+T ++  +L +R    S   TAER     IKE+ CYV  D  +E +
Sbjct: 205 SIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER-----IKEECCYVCPDIVKEFS 256



 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +3

Query: 3   HPVLLTEAPLNPKANR 50
           H  LLTE PLNP  NR
Sbjct: 124 HYFLLTEPPLNPPENR 139


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 60.5 bits (140), Expect = 1e-10
 Identities = 27/77 (35%), Positives = 50/77 (64%)
 Frame = +2

Query: 155 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 334
           +V+DSG   +H +P+ +      A+ R+D+ G+ LT+YL ++++ R Y+     E  IV 
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVN 216

Query: 335 DIKEKLCYVALDFEQEM 385
           +IKE +CYV+ +F+++M
Sbjct: 217 EIKESVCYVSQNFKEDM 233


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 53.2 bits (122), Expect = 2e-08
 Identities = 28/111 (25%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
 Frame = +2

Query: 68  IMFETFNSPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEGYALPHAILRLD 241
           ++FE +N+P++   I  + S Y + +  ++GIVL+ G+  SH +P+  G  +     R+ 
Sbjct: 137 LLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRIS 196

Query: 242 LAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATA 394
             G   + YL+K+   +  SF           +    C+V+ D+  ++A A
Sbjct: 197 WGGSQSSSYLLKLFQIKYPSFPIKMLPSQAELLMHDHCHVSSDYTHDIAHA 247


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 46.0 bits (104), Expect = 3e-06
 Identities = 27/91 (29%), Positives = 44/91 (48%)
 Frame = +2

Query: 74  FETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 253
           FE    P   +A + ++ LYA G   G+V+D G   +   PI +G  +  A  +L L GR
Sbjct: 170 FEECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGR 229

Query: 254 DLTDYLMKILTERGYSFTTTAEREIVRDIKE 346
            +T +L  +L E   +  ++ +     DI E
Sbjct: 230 YMTQHLQNLLRESLPTLKSSGQYVSKEDITE 260


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 46.0 bits (104), Expect = 3e-06
 Identities = 23/76 (30%), Positives = 38/76 (50%)
 Frame = +2

Query: 71  MFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 250
           MFE+   PA Y+A Q   + +ASG+ T  ++D G   S    IY+G+ L         +G
Sbjct: 121 MFESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSG 180

Query: 251 RDLTDYLMKILTERGY 298
             + D L + L ++ +
Sbjct: 181 NAINDILAQTLRDKNF 196


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 31.9 bits (69), Expect = 0.059
 Identities = 15/79 (18%), Positives = 39/79 (49%)
 Frame = +2

Query: 68  IMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 247
           I+F   +     +  +++ + + +G +   V+D G   +    + EG  +P++ ++++  
Sbjct: 265 ILFFDLHFGKAAIVQESLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNSRIKINYG 324

Query: 248 GRDLTDYLMKILTERGYSF 304
           G D+T   MK+L    + +
Sbjct: 325 GDDITLLFMKLLMRSHFPY 343


>SPAC1296.04 |mug65||spore wall assembly protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 198 STKVTLCPTPSSVWTW 245
           STK   CP PS  W W
Sbjct: 52  STKTATCPDPSWEWAW 67


>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 327

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 199 LRRLRSAPRHPPSGLGWSRLDRLPHED 279
           L++ +   +H   G  WS LDR  H+D
Sbjct: 254 LKKSKRVKKHDYGGEDWSLLDRKFHDD 280


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -1

Query: 498 KRRPVNCNTTHYRANWVPGPPSRSPTSFLREVE 400
           + +P   N  H  +  VPGPP+ +   +  E++
Sbjct: 886 ENKPAESNLNHLTSAKVPGPPAFNELEYQSELD 918


>SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 117

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -1

Query: 189 VWETPSPESSTIPVVRPEAYSESTAWMATY--MAGELKVSNMXLGHLLPCW 43
           +W  P+ ++ TIP  + +   +   W + Y    G+L+++ +    L  C+
Sbjct: 39  IWLWPTYDAQTIPWKKKKKSEQHELWASVYNRTIGKLQLNKLTFIDLCDCF 89


>SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/16 (62%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
 Frame = +3

Query: 183 PTPYPSTKVTLC-PTP 227
           P P P TKV +C PTP
Sbjct: 256 PAPSPETKVLICGPTP 271


>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 721

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 167 SGDGVSHTVPIYEGYALP 220
           +G G+ H + + +GYA+P
Sbjct: 157 AGRGIGHQIMVEQGYAMP 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,712,807
Number of Sequences: 5004
Number of extensions: 30045
Number of successful extensions: 121
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)