Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30214
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0925 - 12440917-12441560,12441675-12441810                       31   0.55 
01_01_0017 + 133311-133615,133698-133824,133912-134253                 29   2.2  
06_01_0900 + 6926600-6927202                                           28   3.9  
05_01_0188 - 1357074-1357098,1357811-1357941,1358572-1358667,135...    28   5.1  

>03_02_0925 - 12440917-12441560,12441675-12441810
          Length = 259

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +2

Query: 176 NVFTKGYFVTLLIFIYIIYYRGVCIESASECVGCTCAREHRRDTPPTSAPHTRTCT 343
           N++++GY  +       ++ RG+   S   C    CA +HRR   P  A  T T T
Sbjct: 53  NLYSQGYGTSTAALSTALFNRGL---SCGSCYELRCAGDHRRSCLPGGATVTVTAT 105


>01_01_0017 + 133311-133615,133698-133824,133912-134253
          Length = 257

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 254 SASECVGCTCAREHRRDTPPTSAPHTRT 337
           S+S      C +   R+ PP  APHT T
Sbjct: 6   SSSTASAAACCKSRSRNPPPAPAPHTST 33


>06_01_0900 + 6926600-6927202
          Length = 200

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 323 VRRWGACLGGARARTCIRRTRSHSRYILHG 234
           VR W   + G R +T IRR R   R+  HG
Sbjct: 76  VREWSELVAGPRWKTFIRRFRRSPRHHHHG 105


>05_01_0188 -
           1357074-1357098,1357811-1357941,1358572-1358667,
           1358736-1358769,1358867-1358958,1359273-1359332,
           1359376-1359435,1360016-1360525,1360645-1360719,
           1360809-1361015
          Length = 429

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -3

Query: 247 TYSTVINNINKYQQRYKIAFRKNIRSLKCIYFCLAYKKKRIAYLVFYSFSLIINS 83
           T  TV++  N Y   +      N+     I F   +K KR+AYL  Y  + +IN+
Sbjct: 35  TTKTVLDPWNPYFPLWPPEIPPNLGLNGAICFIEDWKMKRMAYLASYRSTCVINA 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,240,894
Number of Sequences: 37544
Number of extensions: 216469
Number of successful extensions: 515
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)