Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30213
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47700| Best HMM Match : eIF_4EBP (HMM E-Value=3e-35)                97   6e-21
SB_15435| Best HMM Match : Fic (HMM E-Value=7.5)                       30   1.3  
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_22927| Best HMM Match : SerH (HMM E-Value=1.1)                      29   2.3  
SB_44745| Best HMM Match : zf-C2H2 (HMM E-Value=2.2e-05)               29   3.0  
SB_27848| Best HMM Match : zf-C2H2 (HMM E-Value=1.49995e-41)           29   3.0  
SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)                     28   4.0  
SB_25735| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_19689| Best HMM Match : VWA (HMM E-Value=0.0035)                    28   4.0  
SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_40244| Best HMM Match : Cadherin (HMM E-Value=0)                    27   6.9  
SB_3165| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.9  
SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_44796| Best HMM Match : Cornifin (HMM E-Value=1.7)                  27   9.2  

>SB_47700| Best HMM Match : eIF_4EBP (HMM E-Value=3e-35)
          Length = 148

 Score = 97.5 bits (232), Expect = 6e-21
 Identities = 48/102 (47%), Positives = 68/102 (66%)
 Frame = +1

Query: 58  MSASPIARQATHSQSIPSRRVLITDPAQMPDVYSSTPGGTIYSTTPGGTRIVYERSFMLS 237
           M+ +   R +  +++IPSRRV + DP  MP  YS+TPGGTIYSTTPGGTRI+YER F+L 
Sbjct: 1   MNGTQAERGSPLARAIPSRRVPVHDPNHMPSDYSTTPGGTIYSTTPGGTRIIYERKFLLE 60

Query: 238 LRQSPISQTPPQCALPAALLKNPSSVPNVQPASTQKPRSNSI 363
           LR SP++++PP   LP  ++   +   N +P   +KP   S+
Sbjct: 61  LRNSPLAKSPP-ANLP--VIPGVTCEDNGKPEPEEKPEVTSL 99


>SB_15435| Best HMM Match : Fic (HMM E-Value=7.5)
          Length = 695

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +2

Query: 293 Y*RIRLRYPTCSRPAHKNLDLTRYHSTSRRKPS 391
           Y ++RL YP+ S P  K+  LT Y STS   P+
Sbjct: 131 YRKVRLTYPSFSSPNGKDGGLTSYISTSFSPPN 163


>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3066

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 103  IPSRRVLITDPAQMPDVYSSTPGGTIYSTTPGGTRIVYERS 225
            +PS  +++  P+    VYS  P G I   +P G +IVY  S
Sbjct: 1125 LPSSEIIVYSPSGEKIVYS--PSGEIIVYSPSGKKIVYSPS 1163


>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1229

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +1

Query: 58  MSASPIARQATHSQSIPSRRVLITDPAQMPDVYSST-PGGTIYSTTPGGTRIVYERSFML 234
           MS S +A   T   S+   R L++    +P + +S  P  T    TP  TR+V       
Sbjct: 528 MSPSYVANMTTLDSSVSLTRSLLSTTL-IPSISTSILPYNTTVIATPNTTRLVTSTISSS 586

Query: 235 SLRQSPISQTP 267
           ++  S IS TP
Sbjct: 587 TVNVSAISTTP 597


>SB_22927| Best HMM Match : SerH (HMM E-Value=1.1)
          Length = 678

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +1

Query: 94  SQSIPSRRVLITDPAQMPDVYSSTPGGTIYSTTPGGTRIVYERSFMLSLRQSPISQTPPQ 273
           SQ+  S +V +T+ + +P V   T   T+ S       +VY R    S+  SP+S   PQ
Sbjct: 115 SQAQFSAKVTLTN-SHLPSVIKPTEATTLKSYKTKVPTLVYSRVENTSVESSPLSTATPQ 173


>SB_44745| Best HMM Match : zf-C2H2 (HMM E-Value=2.2e-05)
          Length = 572

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +1

Query: 31  KLTPRKFLIMSASPIARQATHSQSIPSRRVLITDPAQMPDVYSSTPGGTIYSTTPGGTRI 210
           ++T  +  + SAS      T  QS+P     +T P Q+  +  STP  T+Y  T  G  I
Sbjct: 423 QVTGPQIKLPSASGSRHHPTTPQSLPVDMQQVTPP-QVNPITISTPSSTLYDCTYCGDNI 481


>SB_27848| Best HMM Match : zf-C2H2 (HMM E-Value=1.49995e-41)
          Length = 257

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
 Frame = +1

Query: 178 IYSTTPGGTRIVYERSFMLSLRQSPISQT----PPQCALPAALLKNPSSVPNVQPAS-TQ 342
           +Y + PG +R   E + +  +RQS +S+T    P +  L A+   + SS   +   S  +
Sbjct: 66  LYDSFPGASRSEAESTLLARMRQSQVSETQERQPMKTWLRASDSNHKSSKKKIFTCSICE 125

Query: 343 KPRSNSISFDE 375
           K  SNSIS  +
Sbjct: 126 KIFSNSISLKQ 136


>SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)
          Length = 1072

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = +3

Query: 6   QVSCVEFCKINTTKVFNNVSVTYREAGHSQPIDSFKEGPDHGSRSNA*CLFQHTGRNHL 182
           Q +  ++ +I  T         +++ GH QP + F   P H    N   +FQ    +HL
Sbjct: 246 QAAPPQYQQIQATHQPTQQQTFFQQQGHQQPGNIFDNPPFHPQSPNQPQIFQQQALHHL 304


>SB_25735| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 303

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = -2

Query: 380 CDSSNDIELDRGFCVLAGCTLGTEDGFFSRAAGSAHCGGVW 258
           C  ++ + ++RG+ + +  T  + DG ++ +AG  + G  W
Sbjct: 202 CTCASSLGVERGYILDSQMTSSSNDGAYTASAGRLYGGSSW 242


>SB_19689| Best HMM Match : VWA (HMM E-Value=0.0035)
          Length = 885

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +3

Query: 219 EVVHVIPSAISDFPNATAMCTSRSPTEESVFGTQRAAGQHTKTSI*LDIIRRVAGNL 389
           E   V+P+  + F + T +C S S   +S   +  A   +TKT+   D++   +  L
Sbjct: 364 EYARVMPTGPNVFSSVTKICVSESRATKSADRSLEAISSNTKTTHDQDLVNSSSSEL 420


>SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2631

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 314  YPTCSRPAHKNLDLTRYHSTSRRKPSAWISKLVI 415
            Y T   P     DLT +HS S R PS ++ ++V+
Sbjct: 1410 YLTTPEPLGTISDLTVWHSDSGRSPSWYLRRIVV 1443


>SB_40244| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 566

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 8/99 (8%)
 Frame = +1

Query: 34  LTPRKFLIMSASPIARQATHSQSIPSRRVLITDPAQMPDVYSSTP--------GGTIYST 189
           LT R F I  +SP+AR      +  S   ++T   ++ D   + P        GG +Y  
Sbjct: 371 LTVRSFNIDPSSPLARARRQVLTSKSDEAIVT--VKVNDANDNQPVFIKDVFVGGFVYKD 428

Query: 190 TPGGTRIVYERSFMLSLRQSPISQTPPQCALPAALLKNP 306
             GG  +V +     S    P+       +   ALL NP
Sbjct: 429 YTGGAILVVKAIDKDSFASGPVIYRETNQSPSGALLLNP 467


>SB_3165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1183

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = +1

Query: 154 YSSTPGGTIYSTTPGGTRIVYERSFMLSLRQSPISQ-TPPQCALPAALLKNPSSVPNVQP 330
           ++S    T +++    T      SF ++L  S  S  +P   A PA+L    S      P
Sbjct: 659 FASFTSFTSFTSFASFTSFTSFTSFAIALLASTASPASPASLASPASLASPASPASLASP 718

Query: 331 ASTQKPRSNSISF 369
           AS   P S + +F
Sbjct: 719 ASLASPASTTTAF 731


>SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1141

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 29/120 (24%), Positives = 43/120 (35%)
 Frame = +3

Query: 27   CKINTTKVFNNVSVTYREAGHSQPIDSFKEGPDHGSRSNA*CLFQHTGRNHLLNYSWRYK 206
            C++  T+  NN SV       + P++  KE        N  CL    G N     S   K
Sbjct: 716  CEVAHTRTSNNTSVCIIGEQRNHPVEKSKE-----IVKNESCLHVPVGGNK--EKSCDQK 768

Query: 207  NSVREVVHVIPSAISDFPNATAMCTSRSPTEESVFGTQRAAGQHTKTSI*LDIIRRVAGN 386
            N    V H   S      N T  C +R P      GT+      +     L+++   +G+
Sbjct: 769  NDSCAVAHTTTS------NKTPACVNREPQNGPGEGTKELVEDGSSLQGTLELVEEESGS 822


>SB_44796| Best HMM Match : Cornifin (HMM E-Value=1.7)
          Length = 165

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
 Frame = +2

Query: 131 IPLKCLMSIPAHRAE--PSTQLLLEVQE*CTRGRSCYPFGNLRFPKRHRNVHFPQPY*RI 304
           IP     +IP HR    P  Q   + Q    R  +   + N   P+ HR+    Q    +
Sbjct: 12  IPQHNNTAIPQHRTTKTPQHQNTAKPQH---RNTTTPRYHNTAIPQ-HRDTATQQHRNTV 67

Query: 305 RLRYPTCSRPAHKNLDLTRYHSTS 376
             RY   + P H++    RYH+T+
Sbjct: 68  TPRYHNTTIPQHRDTTTPRYHNTA 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,060,767
Number of Sequences: 59808
Number of extensions: 372830
Number of successful extensions: 906
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)