Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30213
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical pr...    30   0.85 
AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical ...    30   0.85 
AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.      30   0.85 
U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    28   3.4  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    28   3.4  
U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical pr...    28   3.4  
AF003384-6|AAB54238.2|  451|Caenorhabditis elegans Coenzyme q (u...    28   3.4  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    28   3.4  
AC006696-2|ABQ13058.1|  129|Caenorhabditis elegans Hypothetical ...    28   3.4  
AC006696-1|AAF39991.1|  151|Caenorhabditis elegans Hypothetical ...    28   3.4  
Z68217-1|CAA92465.1|  461|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AL031629-3|CAA20976.1|  555|Caenorhabditis elegans Hypothetical ...    28   4.6  
Z77666-12|CAJ43911.2|  896|Caenorhabditis elegans Hypothetical p...    27   8.0  
Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z75554-1|CAA99953.3|  681|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical
           protein Y76A2B.1 protein.
          Length = 1057

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 22/74 (29%), Positives = 33/74 (44%)
 Frame = +1

Query: 145 PDVYSSTPGGTIYSTTPGGTRIVYERSFMLSLRQSPISQTPPQCALPAALLKNPSSVPNV 324
           P+   + PG T       GT  V ++  M    QS  S  PP+      + + P+ VP  
Sbjct: 361 PETRGAEPGCTAGEWL-NGTNAVPQKVSMAP-SQSSSSPPPPEPVPTPKVAQTPAPVPVP 418

Query: 325 QPASTQKPRSNSIS 366
            PA+  +P SN+ S
Sbjct: 419 TPAAAPRPMSNNNS 432


>AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical
           protein Y76A2B.1 protein.
          Length = 1057

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 22/74 (29%), Positives = 33/74 (44%)
 Frame = +1

Query: 145 PDVYSSTPGGTIYSTTPGGTRIVYERSFMLSLRQSPISQTPPQCALPAALLKNPSSVPNV 324
           P+   + PG T       GT  V ++  M    QS  S  PP+      + + P+ VP  
Sbjct: 361 PETRGAEPGCTAGEWL-NGTNAVPQKVSMAP-SQSSSSPPPPEPVPTPKVAQTPAPVPVP 418

Query: 325 QPASTQKPRSNSIS 366
            PA+  +P SN+ S
Sbjct: 419 TPAAAPRPMSNNNS 432


>AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.
          Length = 1057

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 22/74 (29%), Positives = 33/74 (44%)
 Frame = +1

Query: 145 PDVYSSTPGGTIYSTTPGGTRIVYERSFMLSLRQSPISQTPPQCALPAALLKNPSSVPNV 324
           P+   + PG T       GT  V ++  M    QS  S  PP+      + + P+ VP  
Sbjct: 361 PETRGAEPGCTAGEWL-NGTNAVPQKVSMAP-SQSSSSPPPPEPVPTPKVAQTPAPVPVP 418

Query: 325 QPASTQKPRSNSIS 366
            PA+  +P SN+ S
Sbjct: 419 TPAAAPRPMSNNNS 432


>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
 Frame = +1

Query: 88  THSQSIPSRRVLITDPAQ---MPDVYSSTPGGTIYSTTPGGTRIVYERSFMLSLRQSPIS 258
           T S + P+  V  T P     +P V ++TP  T  +TT   T     ++       +P+ 
Sbjct: 657 TSSTTAPTAPVNPTSPTTAPTVPPVTTTTPTTTTSTTTTTTTTTTTTQT----TPTTPVV 712

Query: 259 QTPPQCALPAALLKNPSSVPNVQPAST 339
            TP         +  P+S P  QPA+T
Sbjct: 713 TTPSTITPTTRPVTQPASQPATQPATT 739


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
 Frame = +1

Query: 88  THSQSIPSRRVLITDPAQ---MPDVYSSTPGGTIYSTTPGGTRIVYERSFMLSLRQSPIS 258
           T S + P+  V  T P     +P V ++TP  T  +TT   T     ++       +P+ 
Sbjct: 713 TSSTTAPTAPVNPTSPTTAPTVPPVTTTTPTTTTSTTTTTTTTTTTTQT----TPTTPVV 768

Query: 259 QTPPQCALPAALLKNPSSVPNVQPAST 339
            TP         +  P+S P  QPA+T
Sbjct: 769 TTPSTITPTTRPVTQPASQPATQPATT 795


>U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical
           protein C12D12.1b protein.
          Length = 648

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
 Frame = +1

Query: 88  THSQSIPSRRVLITDPAQ---MPDVYSSTPGGTIYSTTPGGTRIVYERSFMLSLRQSPIS 258
           T S + P+  V  T P     +P V ++TP  T  +TT   T     ++       +P+ 
Sbjct: 536 TSSTTAPTAPVNPTSPTTAPTVPPVTTTTPTTTTSTTTTTTTTTTTTQT----TPTTPVV 591

Query: 259 QTPPQCALPAALLKNPSSVPNVQPAST 339
            TP         +  P+S P  QPA+T
Sbjct: 592 TTPSTITPTTRPVTQPASQPATQPATT 618


>AF003384-6|AAB54238.2|  451|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 6 protein.
          Length = 451

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 27  CKINTTKVFNNVSVTYREAGHSQPIDSFKEGPDHGSR 137
           C +   K F + SV   +AG S  + SFK G    +R
Sbjct: 34  CSLGANKSFQSKSVLLLDAGRSPSLASFKPGAPFNNR 70


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = +1

Query: 34   LTPRKFLIMSASPIARQATHSQSIPS-RRVLITDPAQMPDVYSSTPGGTIYSTTPGGTRI 210
            LTP +  I+S  P +RQ+T + S+P+      + P+Q   + S+ P   I+ T      +
Sbjct: 832  LTPSELPIISNLPASRQSTSAPSVPNVSNNSPSPPSQSIPIESTVP---IFGTPSSIPSM 888

Query: 211  VYERSFMLSLRQSPIS 258
               RS   S +  P+S
Sbjct: 889  EPTRSTANSSKNHPVS 904


>AC006696-2|ABQ13058.1|  129|Caenorhabditis elegans Hypothetical
           protein W08E12.8b protein.
          Length = 129

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 22/65 (33%), Positives = 30/65 (46%)
 Frame = +1

Query: 112 RRVLITDPAQMPDVYSSTPGGTIYSTTPGGTRIVYERSFMLSLRQSPISQTPPQCALPAA 291
           RRVL  +  + P + S     + +STTP  +      + +LS   S  SQ PP   LP  
Sbjct: 11  RRVLDEEENECPPIESRGSSTSSFSTTPSSSASPLSINQLLS---SSFSQ-PPAPQLPVP 66

Query: 292 LLKNP 306
           L  NP
Sbjct: 67  LAFNP 71


>AC006696-1|AAF39991.1|  151|Caenorhabditis elegans Hypothetical
           protein W08E12.8a protein.
          Length = 151

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 22/65 (33%), Positives = 30/65 (46%)
 Frame = +1

Query: 112 RRVLITDPAQMPDVYSSTPGGTIYSTTPGGTRIVYERSFMLSLRQSPISQTPPQCALPAA 291
           RRVL  +  + P + S     + +STTP  +      + +LS   S  SQ PP   LP  
Sbjct: 33  RRVLDEEENECPPIESRGSSTSSFSTTPSSSASPLSINQLLS---SSFSQ-PPAPQLPVP 88

Query: 292 LLKNP 306
           L  NP
Sbjct: 89  LAFNP 93


>Z68217-1|CAA92465.1|  461|Caenorhabditis elegans Hypothetical
           protein F58G6.1 protein.
          Length = 461

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = +1

Query: 235 SLRQSPISQTPPQCALPAALLK---NPSSVPNVQPASTQKPRSNSISFDESQETFSMD 399
           SL  S    TP Q     + L+   +PS +P+  PA   KPR + +S   S   F  D
Sbjct: 255 SLASSDAPATPDQNKSDNSSLRQTPSPSVLPSPVPAPMAKPRESVVSMANSTNPFDDD 312


>AL031629-3|CAA20976.1|  555|Caenorhabditis elegans Hypothetical
           protein Y106G6D.3 protein.
          Length = 555

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +1

Query: 40  PRKFLIMSASPIARQATHSQSIPSRRVLITDPAQMPDVYSSTP 168
           PR   I +      +A+ +    +R V + DP   P  YS TP
Sbjct: 424 PRSIYIETGKSTYGEASKTSGNNARSVYLADPVSAPKAYSVTP 466


>Z77666-12|CAJ43911.2|  896|Caenorhabditis elegans Hypothetical
           protein K08E7.5c protein.
          Length = 896

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 84  GHSQPIDSFKEGPDH 128
           G+ + + SFKEGPDH
Sbjct: 230 GYERQVPSFKEGPDH 244


>Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical
           protein K08E7.5a protein.
          Length = 1221

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 84  GHSQPIDSFKEGPDH 128
           G+ + + SFKEGPDH
Sbjct: 555 GYERQVPSFKEGPDH 569


>Z75554-1|CAA99953.3|  681|Caenorhabditis elegans Hypothetical
           protein ZC455.1 protein.
          Length = 681

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 24/90 (26%), Positives = 35/90 (38%)
 Frame = +1

Query: 106 PSRRVLITDPAQMPDVYSSTPGGTIYSTTPGGTRIVYERSFMLSLRQSPISQTPPQCALP 285
           P + V   D    P  Y S+     Y  +P  +R    RS     R S  S   P C LP
Sbjct: 10  PIKMVGSQDSWGTPPHYRSSLNSN-YRDSPANSRNTSARS-----RLSVSSAQSPHCFLP 63

Query: 286 AALLKNPSSVPNVQPASTQKPRSNSISFDE 375
                +P S+P+      +   S+ I+ +E
Sbjct: 64  TTRDSSPRSIPSPSLVPMRPDSSSDITINE 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,321,596
Number of Sequences: 27780
Number of extensions: 265334
Number of successful extensions: 802
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)