Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30212
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0306 + 16176873-16177124,16178155-16179152,16179204-161793... 29 1.7
02_03_0134 - 15596379-15597689 29 1.7
12_02_0674 - 21745321-21746223,21746229-21747608 29 2.2
06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315 29 2.2
05_03_0634 + 16432679-16433076,16433358-16433610,16433993-164342... 29 2.2
09_03_0177 - 13120816-13120941,13121032-13121137,13121231-131213... 28 3.9
05_05_0230 - 23476919-23477372,23477656-23477695,23478578-234787... 28 5.1
10_06_0154 - 11291630-11292106,11292192-11292457,11293027-112931... 27 8.9
09_02_0194 - 5641920-5642867,5642895-5642983,5643049-5643280 27 8.9
01_01_0038 + 288522-288572,289395-289512,289790-289809,290077-29... 27 8.9
>11_04_0306 +
16176873-16177124,16178155-16179152,16179204-16179339,
16179448-16179597,16179711-16179891,16181139-16181298,
16182156-16182378
Length = 699
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 120 HSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIY 236
H TS+ + PSTK L+C+ +Q+ L + R P+Y
Sbjct: 583 HLDTTSTSINLHPSTKLLLCS-QEQAGLKFSLSRACPLY 620
>02_03_0134 - 15596379-15597689
Length = 436
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +3
Query: 69 TARRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTG 218
TAR + K + T + S+ S ++SRP K+ + AKQ T AT G
Sbjct: 121 TARNRSSKDMNRT-AKSSSAMQKSNLSSRPGVDKMAASSAKQRTQKATPG 169
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 29.1 bits (62), Expect = 2.2
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Frame = +3
Query: 3 ATSRL-STPFTIHLPK---EAMTTSCTARRTTKKF-ASSTFMRRHSSNTSSKVTSRPSTK 167
+TS++ STP T L + +T+CT+ +T SST S ++SK +S PST
Sbjct: 552 STSKIPSTPSTCELSTATGKIPSTTCTSPLSTATGKTSSTPSTSPLSTSTSKTSSTPSTS 611
Query: 168 KLICTVAKQSTLWATTGRRTP 230
L + K T T TP
Sbjct: 612 PLSSSTIKIPTTARTGELSTP 632
>06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315
Length = 678
Score = 29.1 bits (62), Expect = 2.2
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +3
Query: 123 SSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKKTSSNSTSV 269
+S ++S ++RP+T CT A T +P +K+TSS S+SV
Sbjct: 635 ASRSASPTSARPATSSWTCTS-------AATASASPATAKRTSSTSSSV 676
>05_03_0634 +
16432679-16433076,16433358-16433610,16433993-16434291,
16434553-16434729,16435001-16435621,16435690-16435784,
16436000-16436088,16436185-16436250,16436475-16437026,
16437879-16437953,16438305-16438375,16438456-16438513,
16441506-16442048
Length = 1098
Score = 29.1 bits (62), Expect = 2.2
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = +3
Query: 6 TSRLSTPFTIHL-----PKEAMTTSCTARRTTKKFASSTFMRRHSSNTSSKVTSR 155
TSRL +I L P+E+ +T CT R ++ F M+ + S+ S+K R
Sbjct: 81 TSRLDVKKSISLILGISPEESTSTPCTGRNSSLPFEEIRRMKNNLSDISNKARER 135
>09_03_0177 -
13120816-13120941,13121032-13121137,13121231-13121305,
13121385-13121461,13122462-13122549,13122638-13122699,
13122807-13122863,13122960-13123049,13123186-13123251,
13123530-13123619,13123711-13123804,13123915-13124213
Length = 409
Score = 28.3 bits (60), Expect = 3.9
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 380 AFYQLYKRIVQYIIEFKQYQVPYTQEALHFVGLKI 484
A+ K ++ EF+ ++ P+ EA+H V L+I
Sbjct: 91 AYSSFEKAANAFLQEFRNWETPWAMEAMHTVALEI 125
>05_05_0230 -
23476919-23477372,23477656-23477695,23478578-23478700,
23479114-23479151,23479289-23479674,23479875-23481053,
23481805-23481928,23482733-23482779
Length = 796
Score = 27.9 bits (59), Expect = 5.1
Identities = 23/81 (28%), Positives = 36/81 (44%)
Frame = +3
Query: 21 TPFTIHLPKEAMTTSCTARRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQST 200
TP LPK T S + R ++ S T N S +RP+ + + QST
Sbjct: 35 TPSPNILPKRTATRSSSTTRASRLSVSQT------ENGHSTAPTRPARSNSVTRPSIQST 88
Query: 201 LWATTGRRTPIYSKKTSSNST 263
L +++ RT + + SS S+
Sbjct: 89 LMSSS-NRTAVLNTSISSVSS 108
>10_06_0154 -
11291630-11292106,11292192-11292457,11293027-11293131,
11293210-11293234,11293349-11293465,11293528-11294041,
11295524-11295578,11295980-11296060,11296129-11296219,
11296321-11296417,11297465-11297529,11297950-11298108,
11298208-11298455,11300667-11300835
Length = 822
Score = 27.1 bits (57), Expect = 8.9
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = +2
Query: 59 YELHSEKNYEEIRFLDIYEKTFFQYLQQGHFKAFDKEIDLHSSKAVNFVGNYWQTNADLF 238
YE E+N +E+ Y+ +LQ+ D+ I L+ NF+G+Y Q A++
Sbjct: 125 YEYLIEQN-DELNLPQAYKSLCRMFLQKDRKIVEDEHISLNLGVHHNFLGSYSQYLAEIQ 183
Query: 239 EEDFL 253
++ +
Sbjct: 184 RQNMV 188
>09_02_0194 - 5641920-5642867,5642895-5642983,5643049-5643280
Length = 422
Score = 27.1 bits (57), Expect = 8.9
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = +3
Query: 72 ARRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRR 224
AR K +RR SS S + R +L T AK TLW +G R
Sbjct: 15 ARALLAKLTPLHLLRRGSSALSCFMLPRAILAELYVTGAKSLTLWLWSGIR 65
>01_01_0038 +
288522-288572,289395-289512,289790-289809,290077-290109,
290648-290779,290859-290948,291402-291527
Length = 189
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 360 KLRPGTQPSTSSIKGLFNTS-SNLNSTRYHTHKKLFT 467
+L P +PSTS+ KGL L S+R ++H LF+
Sbjct: 4 RLAPSARPSTSATKGLITGGVILLVSSRKNSHNFLFS 40
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,087,426
Number of Sequences: 37544
Number of extensions: 248705
Number of successful extensions: 646
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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