Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30212
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g09000.1 68416.m01053 proline-rich family protein 30 1.1
At1g04730.1 68414.m00469 AAA-type ATPase family protein contains... 29 1.9
At2g43760.1 68415.m05440 molybdopterin biosynthesis MoaE family ... 29 2.5
At4g37190.1 68417.m05265 expressed protein 28 4.3
At4g11380.1 68417.m01835 beta-adaptin, putative strong similarit... 27 5.7
At1g72940.1 68414.m08436 disease resistance protein (TIR-NBS cla... 27 5.7
At1g72920.1 68414.m08434 disease resistance protein (TIR-NBS cla... 27 5.7
At1g69230.2 68414.m07930 expressed protein 27 5.7
At1g69230.1 68414.m07929 expressed protein 27 5.7
>At3g09000.1 68416.m01053 proline-rich family protein
Length = 541
Score = 29.9 bits (64), Expect = 1.1
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +3
Query: 111 MRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKKTSSNST 263
+RR SS+ SS+ TSRP+T T ST T R + S +S +T
Sbjct: 144 LRRPSSSGSSRSTSRPATPTRRSTTPTTSTSRPVTTRASNSRSSTPTSRAT 194
>At1g04730.1 68414.m00469 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 954
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 123 SSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKKTS 251
+S S + ++P KK+ +AK++ A +RTP+ SK S
Sbjct: 833 ASGGKSGILNKPEIKKINQDLAKKTNAAANESQRTPVTSKPPS 875
>At2g43760.1 68415.m05440 molybdopterin biosynthesis MoaE family
protein contains Pfam profile: PF02391 molybdopterin
converting factor, subunit 2
Length = 198
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +2
Query: 113 EKTFFQYLQQGHFKAFDKEIDLHSSKAVNFVGNYWQTNADLFE-EDFLQFYQRSYEVNAR 289
EK + L++GH K ID S+ + + T D+FE + L+ +Y A
Sbjct: 5 EKNLIEILEEGHKVDVVKYIDYVSAPQAGAIATFSGTTRDMFEGKTVLELRYEAYVPMAT 64
Query: 290 RVLGA 304
R L +
Sbjct: 65 RCLSS 69
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = -2
Query: 146 DLAGGIGRMSSHKCRGSEFLRSSSRCATRSHCFFGQMDSKRS 21
+L G +G MSS RG+ + SS + S +FG +D++RS
Sbjct: 71 NLKGALGTMSS---RGTLYNEGSSSRSDSSATWFGDVDTQRS 109
>At4g11380.1 68417.m01835 beta-adaptin, putative strong similarity
to SP|Q10567 Adapter-related protein complex 1 beta 1
subunit (Beta-adaptin 1) [Homo sapiens], beta-adaptin
[Drosophila melanogaster] GI:434902; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 894
Score = 27.5 bits (58), Expect = 5.7
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = +2
Query: 206 GNYWQTNADLFEEDFLQFYQRSYEVNARRVLGAAPKPFNQYTFIPSALDFYQTSARDPA 382
G Q +A L +D FY +E N++ VL FN+ TF +A Q PA
Sbjct: 676 GQGLQISAQLSRKDGQVFYSMLFENNSQSVLDGFMIQFNKNTFGLAAAGSLQIPPLHPA 734
>At1g72940.1 68414.m08436 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 371
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +2
Query: 146 HFKAFDKEIDLHSSKAVNFVG 208
H KA +K++DL+S+K++ VG
Sbjct: 191 HMKALNKKLDLNSNKSLRVVG 211
>At1g72920.1 68414.m08434 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 275
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +2
Query: 146 HFKAFDKEIDLHSSKAVNFVG 208
H KA +K++DL+S+K++ VG
Sbjct: 191 HMKALNKKLDLNSNKSLRVVG 211
>At1g69230.2 68414.m07930 expressed protein
Length = 110
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 96 ASSTFMRRHSSNTSSKVTSRPSTK 167
+++ +MR NT + +T RPSTK
Sbjct: 67 SANNYMRAEGQNTGNFITDRPSTK 90
>At1g69230.1 68414.m07929 expressed protein
Length = 110
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 96 ASSTFMRRHSSNTSSKVTSRPSTK 167
+++ +MR NT + +T RPSTK
Sbjct: 67 SANNYMRAEGQNTGNFITDRPSTK 90
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,430,929
Number of Sequences: 28952
Number of extensions: 197126
Number of successful extensions: 633
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -