Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30211
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 31 0.14
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 29 0.31
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 29 0.55
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 29 0.55
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 5.1
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 25 5.1
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 6.7
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 25 6.7
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch... 25 6.7
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 25 8.9
SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 8.9
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 8.9
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 25 8.9
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 30.7 bits (66), Expect = 0.14
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3
Query: 42 YLPLFNSFYYPFAQRSNDYELHSEXELRRN 131
++PL ++ Y P A NDYEL E E RR+
Sbjct: 516 HMPLTHTTYEPSAPYYNDYELAEEIERRRH 545
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 29.5 bits (63), Expect = 0.31
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +2
Query: 119 TTKKFASSTFMRRHSSNTSSKV--TSRPSTKKLICTVAKQSTLWATTGRRTPIYSKKTSS 292
T+ SST + +S TSS V +S P T + + T + TPI S +
Sbjct: 2360 TSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVN 2419
Query: 293 NSTSV 307
STS+
Sbjct: 2420 TSTSI 2424
Score = 26.2 bits (55), Expect = 2.9
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Frame = +2
Query: 119 TTKKFASSTFMRRHSSNTSSKV--TSRPSTKKLICTVAKQSTLWATTGRRTPIYSKKTSS 292
T+ SS+ + + TSS V TS P T + + T TPI S +
Sbjct: 2312 TSTPITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTALN 2371
Query: 293 NSTSV 307
STS+
Sbjct: 2372 TSTSI 2376
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 28.7 bits (61), Expect = 0.55
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +2
Query: 137 SSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKKTSSNSTS 304
SS+ SS++SS +SRPS+ T ST +T S TSS S
Sbjct: 215 SSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVPS 270
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +2
Query: 161 SSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKKTSSNSTS 304
SS TSS +S PS+ T + S+ +++ + S +SS+S+S
Sbjct: 133 SSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSS 180
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 28.7 bits (61), Expect = 0.55
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +2
Query: 161 SSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKKTSSNS 298
S ++++ +TS + +I T + +++ +T TPI S TSSNS
Sbjct: 154 SDSSATTITSSSPSTSIIGTGSTDTSVSSTLTYHTPIASPTTSSNS 199
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 25.4 bits (53), Expect = 5.1
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +2
Query: 164 SNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKKTSSNSTSV 307
S +S K S PST K + ++ + +P+Y+ K+ +ST V
Sbjct: 651 SLSSPKRQSVPSTPKASLSPRVHKSMTYSPSEASPLYANKSPKSSTMV 698
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 25.4 bits (53), Expect = 5.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 15 SWYSPLRTGYLPLFNSFYYPFAQRSNDYELHSEXELRRNS 134
S SP+R+ L N F + ND E+H + +RNS
Sbjct: 1137 SLVSPIRS--LVSDNDFIQLYTSDKNDQEIHENKDSQRNS 1174
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 25.0 bits (52), Expect = 6.7
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +3
Query: 15 SWYSPLRTGYLPLFNSFYYPFAQRSNDYELHSEXELRRNSL 137
++Y P++ G +P NS F Q++N E SE ELR+NS+
Sbjct: 14 NYYKPVQ-GSIPA-NSEATNF-QQNNSRENKSECELRQNSI 51
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 25.0 bits (52), Expect = 6.7
Identities = 19/77 (24%), Positives = 38/77 (49%)
Frame = +2
Query: 74 ICPKKQ*LRVAQRXRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATT 253
I + Q + + ++ +SS+ SS TSS ++ PST + + S+ +++
Sbjct: 101 IYAQSQQFNIVEGAASSSSSSSSSSSSLVSSTTSSSSSATPSTTS---SSSSSSSSSSSS 157
Query: 254 GRRTPIYSKKTSSNSTS 304
++ S K+SS S+S
Sbjct: 158 SSKSSSSSSKSSSRSSS 174
>SPBC56F2.12 |ilv5||acetohydroxyacid
reductoisomerase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 25.0 bits (52), Expect = 6.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 423 EGWVPGRSLVEVKSTRNKCVLVERLRS 343
+GWVPG++L V+ K ++ L S
Sbjct: 127 DGWVPGKTLFPVEEAIKKGSIIMNLLS 153
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 24.6 bits (51), Expect = 8.9
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Frame = +2
Query: 230 QSTL-WATTGRRTPIYS--KKTSSNSTSV 307
QS L ++T RRTP YS +T S+STSV
Sbjct: 93 QSLLPFSTEVRRTPTYSVMNETDSSSTSV 121
>SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 24.6 bits (51), Expect = 8.9
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Frame = +1
Query: 286 FLQFYQ--RSYEVNARRVLGAAPKPFNQYTFIPSALDFYQTSARDPAFYQLYKRI 444
F F Q R N +R+L P N Y+ S L Y+ R + Y K +
Sbjct: 15 FFSFKQTKRKKNKNKKRILSILPYYKNSYSDFISVLQMYKVHIRMVSIYIFLKAL 69
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 24.6 bits (51), Expect = 8.9
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +2
Query: 137 SSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWAT---TGRRTPIYSKKTSSNSTSV 307
+STF + TS TS ST TVA ST ++ T P S T S+++S+
Sbjct: 617 TSTFTSSGFNTTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTTSGLPTSSASTPSSNSSI 676
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 124 EEIRFLDIYEKTFFQYLQQGHFKAFDKEID 213
+ +R +++YE TF Q+ K+ +EID
Sbjct: 587 QRLRRMNLYEITFLSMKQKMQLKSLREEID 616
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,970,275
Number of Sequences: 5004
Number of extensions: 36305
Number of successful extensions: 138
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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