Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30211
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0306 + 16176873-16177124,16178155-16179152,16179204-161793...    33   0.18 
06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315     29   2.2  
02_05_0980 - 33271879-33271934,33272031-33272100,33272194-332723...    28   5.1  
02_02_0141 - 7131260-7131581,7132124-7132430,7134018-7134076,713...    27   6.8  
02_03_0134 - 15596379-15597689                                         27   8.9  
01_01_0038 + 288522-288572,289395-289512,289790-289809,290077-29...    27   8.9  

>11_04_0306 +
           16176873-16177124,16178155-16179152,16179204-16179339,
           16179448-16179597,16179711-16179891,16181139-16181298,
           16182156-16182378
          Length = 699

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 98  RVAQRXRTTKKFASSTFMR--RHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPI 271
           R+ +  R  KK     F +   H   TS+ +   PSTK L+C+  +Q+ L  +  R  P+
Sbjct: 561 RIGEEERELKKAGLCRFTKVLGHLDTTSTSINLHPSTKLLLCS-QEQAGLKFSLSRACPL 619

Query: 272 Y 274
           Y
Sbjct: 620 Y 620


>06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315
          Length = 678

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +2

Query: 161 SSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKKTSSNSTSV 307
           +S ++S  ++RP+T    CT        A T   +P  +K+TSS S+SV
Sbjct: 635 ASRSASPTSARPATSSWTCTS-------AATASASPATAKRTSSTSSSV 676


>02_05_0980 -
           33271879-33271934,33272031-33272100,33272194-33272355,
           33272787-33272895,33273350-33273608,33274193-33274272,
           33274370-33274499,33274676-33274793,33275222-33275302,
           33275510-33275827,33277490-33277741
          Length = 544

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 21/58 (36%), Positives = 27/58 (46%)
 Frame = +1

Query: 88  AMTTSCTAXKNYEEIRFLDIYEKTFFQYLQQGHFKAFDKEIDLHSSKAVNFVGNYWQT 261
           A   S TA K Y E+      E    + L  GH K  DKEI   + K + F+G Y +T
Sbjct: 367 ACNISTTARKEYSEVSGGQDGE-LISRLLSFGHCK--DKEIAAKTVKTIKFLGLYEET 421


>02_02_0141 -
           7131260-7131581,7132124-7132430,7134018-7134076,
           7134586-7134667,7135972-7136047,7136382-7136443,
           7136946-7137006
          Length = 322

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 95  LRVAQRXRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQST 238
           L + QR     K  +    +R S  + + + SRPS+  L+C+ AK  T
Sbjct: 262 LDMNQRSNHLPKPCNKMIAKRPSKGSFTCLLSRPSSTSLLCSSAKPPT 309


>02_03_0134 - 15596379-15597689
          Length = 436

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = +2

Query: 122 TKKFASSTFMRRHSSNTS----SKVTSRPSTKKLICTVAKQSTLWATTG 256
           T +  SS  M R + ++S    S ++SRP   K+  + AKQ T  AT G
Sbjct: 121 TARNRSSKDMNRTAKSSSAMQKSNLSSRPGVDKMAASSAKQRTQKATPG 169


>01_01_0038 +
           288522-288572,289395-289512,289790-289809,290077-290109,
           290648-290779,290859-290948,291402-291527
          Length = 189

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 398 KLRPGTQPSTSSIKGLFNTS-SNLNSTRYHTHKKLFT 505
           +L P  +PSTS+ KGL       L S+R ++H  LF+
Sbjct: 4   RLAPSARPSTSATKGLITGGVILLVSSRKNSHNFLFS 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,815,640
Number of Sequences: 37544
Number of extensions: 232653
Number of successful extensions: 570
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)