Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30211
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_57651| Best HMM Match : Homeobox (HMM E-Value=3e-29) 28 4.0
SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14) 28 4.0
SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_23488| Best HMM Match : PSI_8 (HMM E-Value=5) 28 5.3
SB_35683| Best HMM Match : Amino_oxidase (HMM E-Value=0.0092) 28 5.3
SB_29619| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_6363| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_6584| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.01) 27 9.2
SB_3615| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_25448| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_14410| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16) 27 9.2
>SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2353
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +2
Query: 149 MRRHSSNTSSKVTSRPSTKK-LICTVAKQSTLWATTGRRTPIYSKKTSSNSTS 304
+R+ S N S K ++CT+ K T RT SK ++ NSTS
Sbjct: 2196 LRKCSENVSRKAQEHCRVAPYMVCTLTKSCRYQTATRTRTVRLSKASNENSTS 2248
>SB_57651| Best HMM Match : Homeobox (HMM E-Value=3e-29)
Length = 294
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 259 TNADLFEEDFLQFYQRSYEVNARRVLGAAPKPFNQYTFIPSALDFYQTSARDPAFYQ 429
T AD+F +D FYQ+S + ++ +PK SA Y S + P+ YQ
Sbjct: 54 TRADMFYQDPFLFYQQSPHYSPHNIVPPSPKYSPHLMGDCSAQSAYFVS-KQPSHYQ 109
>SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)
Length = 1197
Score = 28.3 bits (60), Expect = 4.0
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +2
Query: 104 AQRXRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKK 283
A+ R K+ S+ M R S ++ +R +KL VA T T GR+TP+ K+
Sbjct: 1134 AENRRRAKEEMSA--MERELEEASEQIKAREQ-EKLNKHVASVRTKIVTPGRKTPVTPKR 1190
Query: 284 T 286
T
Sbjct: 1191 T 1191
>SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +1
Query: 325 RRVLGAAPKPFNQ--YTFIPSALDFYQTSARDPAFYQLYKRIVQYIIEFKQYQVPY 486
R VL A KP+ Y F +ALD ++T +D Y + + + EF Q + Y
Sbjct: 182 RYVLDALRKPYGSKMYMFGIAALDRFKTRLKDYPHYCQHLASIPHFKEFPQSLIEY 237
>SB_23488| Best HMM Match : PSI_8 (HMM E-Value=5)
Length = 192
Score = 27.9 bits (59), Expect = 5.3
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +1
Query: 250 YWQTNADLFEEDFLQFYQRSYEVNARRVLGA--APKPFNQYTFIPSALDFYQTSA 408
Y T L ++ LQFY + Y + PK + QYTF + + Y +SA
Sbjct: 93 YIPTCVQLRHKNLLQFYVKKYVACLMFATSSDFCPKEYEQYTFADTWIASYLSSA 147
>SB_35683| Best HMM Match : Amino_oxidase (HMM E-Value=0.0092)
Length = 729
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 235 NFVGNYWQTNADLFEEDFLQFYQRSYEVNA-RRVLGAAPKPFNQYT 369
N G WQ+ ADL + F R ++N +++L A K +Y+
Sbjct: 249 NGTGGIWQSVADLLPRSWFHFENRVVQLNIDKKILTVASKDGAKYS 294
>SB_29619| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 745
Score = 27.9 bits (59), Expect = 5.3
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Frame = +1
Query: 172 LQQGHFKAFDKEIDLHSSKAVNFVGNYWQTNADL--FEEDFLQFYQ-RSYEVNARRVLGA 342
LQQ F F +++ KA+ F G W +++ + FYQ + E+ R+
Sbjct: 526 LQQTKFSRFKNSMNVKFGKALKFTGKLWNVGSEVANIAGAAMMFYQIINTEMVCRKRAEE 585
Query: 343 APKPFNQYT 369
A K ++ T
Sbjct: 586 AKKALDEIT 594
>SB_6363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Frame = +1
Query: 355 FNQYTFIPSALDFYQTSARDPAFYQLYKR-----IVQYIIEFKQYQVPYTQEALHFV 510
+ QYT + L + Q + + Y R QY I + QY YT+ ALH +
Sbjct: 60 YRQYTSRNTLLAYTQYAIHYTQYATRYTRNALLAYTQYAINYTQYATCYTRNALHAI 116
>SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3038
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +2
Query: 407 PGTQPSTSSIKGLFNTSSNL 466
PG+QPST+S GLF++ ++
Sbjct: 261 PGSQPSTNSNNGLFDSGEHV 280
>SB_6584| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.01)
Length = 742
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +2
Query: 407 PGTQPSTSSIKGLFNTSSNL 466
PG+QPST+S GLF++ ++
Sbjct: 389 PGSQPSTNSNNGLFDSGEHV 408
>SB_3615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +2
Query: 407 PGTQPSTSSIKGLFNTSSNL 466
PG+QPST+S GLF++ ++
Sbjct: 135 PGSQPSTNSNNGLFDSGEHV 154
>SB_25448| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 538
Score = 27.1 bits (57), Expect = 9.2
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +2
Query: 116 RTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYS 277
R +K A S+ M S T++ S P + A + LW T RRT + S
Sbjct: 233 RRSKALAPSSRMHAAHSMTAAGTASAPGPGEKSDHTALKFALWMTFERRTTVLS 286
>SB_14410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 710
Score = 27.1 bits (57), Expect = 9.2
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +2
Query: 116 RTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYS 277
R +K A S+ M S T++ S P + A + LW T RRT + S
Sbjct: 133 RRSKALAPSSRMHAAHSMTAAGTASAPGPGEKSDHTALKFALWMTFERRTTVLS 186
>SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)
Length = 2352
Score = 27.1 bits (57), Expect = 9.2
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +1
Query: 13 FPGTRLFELATSRFSTPFTIHLPKEAMTTSCTAXKNYEEIRFLDIYE 153
FPG R +T+ T TI K + T YEE R L+I E
Sbjct: 958 FPGKRKVVFSTNCAETSITIPGVKFVVDTGMAKEMKYEEKRGLNILE 1004
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,526,629
Number of Sequences: 59808
Number of extensions: 250473
Number of successful extensions: 742
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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