Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30211
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53341-6|AAC69106.1|  790|Caenorhabditis elegans Hypothetical pr...    32   0.28 
U53341-5|AAL06020.1|  842|Caenorhabditis elegans Hypothetical pr...    32   0.28 
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    30   0.85 
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    30   0.85 
U23527-5|AAC46572.2|  915|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AL132863-11|CAB60578.2|  143|Caenorhabditis elegans Hypothetical...    28   3.4  
Z74472-5|CAA98943.1|  802|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U58753-9|AAC24441.2|  441|Caenorhabditis elegans Seryl trna synt...    27   8.0  
AF125451-11|AAP13763.1|  525|Caenorhabditis elegans Hypothetical...    27   8.0  
AF125451-10|AAD12819.2|  511|Caenorhabditis elegans Hypothetical...    27   8.0  
AB016796-1|BAA74732.1|  441|Caenorhabditis elegans Seryl-tRNA sy...    27   8.0  

>U53341-6|AAC69106.1|  790|Caenorhabditis elegans Hypothetical
           protein F49E10.2a protein.
          Length = 790

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +2

Query: 161 SSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKKTSSNSTS 304
           +++TSS  T +PST   + +    ST   TT    P  S  TS+++T+
Sbjct: 586 TTSTSSTTTQKPSTTTTVPSTTPTSTTTTTTTTPKPTTSTSTSTSTTT 633


>U53341-5|AAL06020.1|  842|Caenorhabditis elegans Hypothetical
           protein F49E10.2b protein.
          Length = 842

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +2

Query: 161 SSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKKTSSNSTS 304
           +++TSS  T +PST   + +    ST   TT    P  S  TS+++T+
Sbjct: 586 TTSTSSTTTQKPSTTTTVPSTTPTSTTTTTTTTPKPTTSTSTSTSTTT 633


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 21/62 (33%), Positives = 29/62 (46%)
 Frame = +2

Query: 119 TTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKKTSSNS 298
           TT    S+T     +S T+++VTS  ST          +T  A+T    P  S  T+S S
Sbjct: 395 TTTMLTSTTTEEPSTSTTTTEVTSTSSTVTTTEPTTTLTTSTASTSTTEPSTSTVTTSPS 454

Query: 299 TS 304
           TS
Sbjct: 455 TS 456



 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +2

Query: 158 HSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKKTSSNSTS 304
           ++  ++S  T+ P+T  +  TV   +T+  +T   T   S  TS+ STS
Sbjct: 269 YTIESTSTSTTTPTTTTVTSTVTSTTTVPTSTSTVTTAMSTSTSTPSTS 317


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 21/62 (33%), Positives = 29/62 (46%)
 Frame = +2

Query: 119 TTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKKTSSNS 298
           TT    S+T     +S T+++VTS  ST          +T  A+T    P  S  T+S S
Sbjct: 395 TTTMLTSTTTEEPSTSTTTTEVTSTSSTVTTTEPTTTLTTSTASTSTTEPSTSTVTTSPS 454

Query: 299 TS 304
           TS
Sbjct: 455 TS 456



 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +2

Query: 158 HSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKKTSSNSTS 304
           ++  ++S  T+ P+T  +  TV   +T+  +T   T   S  TS+ STS
Sbjct: 269 YTIESTSTSTTTPTTTTVTSTVTSTTTVPTSTSTVTTAMSTSTSTPSTS 317


>U23527-5|AAC46572.2|  915|Caenorhabditis elegans Hypothetical
           protein K09E2.1 protein.
          Length = 915

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
 Frame = +2

Query: 116 RTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWA----TTGRRTPIYSKK 283
           R T +  SST +   SS TSS  T++P+T     T    ST  +    +T + TP  S+ 
Sbjct: 546 RVTFRPVSSTVVSTKSSTTSS-TTTKPTTLSTTTTTQVPSTTTSVTVPSTQKATPSPSRT 604

Query: 284 TSSNSTS 304
           T  ++T+
Sbjct: 605 TKKSTTT 611


>AL132863-11|CAB60578.2|  143|Caenorhabditis elegans Hypothetical
           protein Y37H2A.11 protein.
          Length = 143

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 22/102 (21%), Positives = 42/102 (41%)
 Frame = +2

Query: 2   NPXVFLVLASSNWLPPAFQLLLLSICPKKQ*LRVAQRXRTTKKFASSTFMRRHSSNTSSK 181
           NP    ++++ + L    Q   ++ C   Q     Q   TT  + + T +   ++ T   
Sbjct: 8   NPSCIQMISAFSILLIVIQRTFINACIPTQ-----QIETTTYPYIAPTTITVPTTTTEPT 62

Query: 182 VTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKKTSSNSTSV 307
            T+  +T  + CT    +      G  TPI S  T +N+ ++
Sbjct: 63  TTTTTTTNCVSCTAGLLTFTTGNIGDTTPIQSPGTDANNCAI 104


>Z74472-5|CAA98943.1|  802|Caenorhabditis elegans Hypothetical
           protein F23H12.5 protein.
          Length = 802

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 19/64 (29%), Positives = 26/64 (40%)
 Frame = +2

Query: 107 QRXRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKKT 286
           Q  + T     STF       ++ + TS PST     T    ST   TT   T   + KT
Sbjct: 178 QSPKPTYPSVPSTFEFEKYPKSTEEPTSTPSTSTSTTTTTTTSTTTTTTEAPTTTTTIKT 237

Query: 287 SSNS 298
           ++ S
Sbjct: 238 TTES 241


>U58753-9|AAC24441.2|  441|Caenorhabditis elegans Seryl trna
           synthetase protein 1 protein.
          Length = 441

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 426 VEGWVPGRSLVEVKSTRNKCVLVERLRSSTKY 331
           +E W+PGR L    S+ + C   +  R   KY
Sbjct: 345 IEAWMPGRKLYGEVSSASNCTDFQSRRLGIKY 376


>AF125451-11|AAP13763.1|  525|Caenorhabditis elegans Hypothetical
           protein Y37E11B.10b protein.
          Length = 525

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +2

Query: 83  KKQ*LRVAQRXRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLIC 217
           K +  RVA++ R  K    ST     S  ++    S    KKL+C
Sbjct: 225 KSKKARVARKPRMPKSSVDSTSSSDESGKSAKSAKSTKMAKKLVC 269


>AF125451-10|AAD12819.2|  511|Caenorhabditis elegans Hypothetical
           protein Y37E11B.10a protein.
          Length = 511

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +2

Query: 83  KKQ*LRVAQRXRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLIC 217
           K +  RVA++ R  K    ST     S  ++    S    KKL+C
Sbjct: 211 KSKKARVARKPRMPKSSVDSTSSSDESGKSAKSAKSTKMAKKLVC 255


>AB016796-1|BAA74732.1|  441|Caenorhabditis elegans Seryl-tRNA
           synthetase protein.
          Length = 441

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 426 VEGWVPGRSLVEVKSTRNKCVLVERLRSSTKY 331
           +E W+PGR L    S+ + C   +  R   KY
Sbjct: 345 IEAWMPGRKLYGEVSSASNCTDFQSRRLGIKY 376


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,838,330
Number of Sequences: 27780
Number of extensions: 199519
Number of successful extensions: 716
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)