Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30210
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    29   0.55 
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17...    27   2.2  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   2.2  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    26   2.9  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    26   3.8  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    25   6.7  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   8.9  
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    25   8.9  

>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 28.7 bits (61), Expect = 0.55
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +2

Query: 389  KEGDYELDPKLKKDAVEVFDADFEKVD---FDNGAAAAGLINKW 511
            K+G   L+PK+  + V  + +++EK+D   FD+     GL++ +
Sbjct: 1277 KDGSGVLEPKIAANTVNQYPSEWEKIDLKVFDDLETTEGLLSSY 1320


>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 268

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +2

Query: 92  IKNPVLSMDSKALSSAITKFSAKFCNELDKKKNVVSSPLSAEYLLALITLGTTD 253
           I++P+L+        +I K++A+  NEL       S PL AE+     ++G  D
Sbjct: 48  IRSPILTRQPSEFEKSIYKYNAELWNEL-------SDPLPAEFYFKKGSVGEKD 94


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 365  NVANKIYIKEGDYELDPKLKKDAVEVFDADFEKV 466
            + ++  Y+K+G +EL   +  D   V D DF+ V
Sbjct: 1256 STSDNFYLKQGGFELLDTIITDFSNVMDPDFDDV 1289


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1272

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 469  VNFFKICIKYLDSV-LLKFWVELIVTLLDVY 380
            V  F+ C K + +  +  FW+EL+ TLL VY
Sbjct: 1101 VPLFEQCTKEVSAEDVTNFWLELVFTLLLVY 1131


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 110 SMDSKALSSAITKFSAKFCNELDKKKNVVS 199
           S DSK+L   +  F++K C E+DKK  +++
Sbjct: 10  SCDSKSLG--VDDFTSKRCREIDKKALLIT 37


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +2

Query: 98  NPVLSMDS--KALSSAITKFSAKFCNELDKKKNVVSSPLSAEYLLALITLGTTDPAHEEL 271
           NP +S+D   KAL S  +   +   N      NV SSP      L+ +    TD + +E 
Sbjct: 255 NPEISLDEPIKALPSTTSDAPSSLLNT-----NVSSSPSKFRKFLSSVIPAKTDLSAKES 309

Query: 272 LTS 280
           LTS
Sbjct: 310 LTS 312


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 279  LVNSSSCAGSVVPKVINASKYSADNGDD 196
            L+  SS   SV PK++NA  Y+    DD
Sbjct: 1006 LLQISSKLSSVAPKILNAVLYNLVVSDD 1033


>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 70  NTIYTIGNKEPCSQYGFKGFILCNHQVL 153
           NTI T  N++  + +  KG  L  HQ+L
Sbjct: 117 NTILTPENRKRTASFSTKGVSLSQHQLL 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,941,762
Number of Sequences: 5004
Number of extensions: 36919
Number of successful extensions: 116
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)