Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30210
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0011 - 7337618-7338496,7338596-7338991 30 1.3
04_04_0619 + 26652923-26653267,26653440-26654273 30 1.3
01_06_0887 + 32733300-32734565 30 1.3
02_04_0632 + 24614659-24615528,24615636-24616133 29 2.2
01_01_1157 - 9203448-9203560,9204725-9204768,9205345-9205433,920... 29 2.2
11_02_0012 - 7346282-7347136,7347234-7347593 28 3.9
04_03_0616 - 18052596-18053779,18053935-18054099,18056236-180562... 28 5.1
08_01_0002 - 20208-20594,21525-21671,21754-21917,22005-22162,245... 27 6.8
03_05_0294 + 22855503-22855946,22856346-22856399 27 6.8
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 27 6.8
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69... 27 6.8
07_01_0731 - 5566878-5567513 27 8.9
02_05_0997 + 33382756-33382861,33383070-33383161,33383936-333841... 27 8.9
01_01_0061 + 483116-483757,483891-484046,484171-484262,484410-48... 27 8.9
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 29.9 bits (64), Expect = 1.3
Identities = 32/119 (26%), Positives = 46/119 (38%), Gaps = 5/119 (4%)
Frame = +2
Query: 173 LDKKKNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGIT--DD--DTIRXXXXXXXXXX 340
+ KN+V SP S LAL+ G +ELL LG DD +++R
Sbjct: 27 VSSNKNLVFSPASLYAALALVAAGARGTTLDELLALLGAASLDDLEESVRRAVEVGLADE 86
Query: 341 XXIKGVTFNVANKIYIKEGDYELDPKLKKDAVEVFDADFEKVDFD-NGAAAAGLINKWV 514
G + A ++ E EL P + A + A +F + INKWV
Sbjct: 87 SASGGPRVSDACGVWHDE-TLELKPAYRAAAAGTYKAVTRAANFQRQPKRSRKKINKWV 144
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 29.9 bits (64), Expect = 1.3
Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 1/115 (0%)
Frame = +2
Query: 173 LDKKKNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGITDDDTIRXXXXXXXXXXXXIK 352
+ ++ N + SPL LAL+ GT +LL LG +
Sbjct: 16 ITEQSNFMFSPLGLRAGLALLATGTDGETLRQLLAFLGSQHIHQLNAASAGLLAEMRAWP 75
Query: 353 GVTFNVANKIYIKEGDYELDPKLKKDAVEVFDADFEKVDFDNGA-AAAGLINKWV 514
++F A I++ + L P+ + A A VDF N A AAA +N+++
Sbjct: 76 QLSF--AAGIFV-DRSLRLRPEFQSTAAAAHGAFPRSVDFQNQANAAAAEVNRFI 127
>01_06_0887 + 32733300-32734565
Length = 421
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 359 TFNVANKIYIKEGDYELDPKLKK--DAVEVFDADFEKVDFDNGAAAAGLIN 505
TFN+ N+I ++ EL P+ K + ++ A F +G AGLIN
Sbjct: 123 TFNLPNRIQLEREALELAPEEKPLLHRLVIYTATLSSDPFMDGCVVAGLIN 173
>02_04_0632 + 24614659-24615528,24615636-24616133
Length = 455
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Frame = -1
Query: 297 SSVIPRLVNSSSCAGSVVPKVINASKYSA----DNGDD 196
++V P L+ +G+ PK+ NAS Y+A DNGDD
Sbjct: 71 TAVDPSLMGFVLISGTQFPKINNASAYAAADPGDNGDD 108
>01_01_1157 -
9203448-9203560,9204725-9204768,9205345-9205433,
9205565-9205609,9205805-9205912,9206003-9206088,
9206492-9206579,9206725-9206910,9207181-9207256,
9207332-9207381,9207715-9207777,9207882-9207962,
9208028-9208130,9208246-9208348,9208489-9208549,
9209059-9209154,9209185-9209225,9209848-9209922,
9210412-9210562
Length = 552
Score = 29.1 bits (62), Expect = 2.2
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = -1
Query: 354 PFIDF--NFDDTAENDERIVSSSVIPRLVNSSSCAGSVVPKVINASKYSADNG 202
PF+ F +DD +++R V+S I +SCAGSV+ + ++ +K D G
Sbjct: 84 PFLYFMVQYDDILFHEKRRVTSVTIDFTFGLNSCAGSVI-RDLHIAKQEEDIG 135
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 176 DKKKNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGITDDDTI 307
+ +NVV SP+S LAL+ G +EL+ LG D +
Sbjct: 28 NSNRNVVFSPVSLYAALALVASGARGTTLDELVALLGAASLDDL 71
>04_03_0616 -
18052596-18053779,18053935-18054099,18056236-18056260,
18057259-18057312,18057354-18057619,18058633-18059371
Length = 810
Score = 27.9 bits (59), Expect = 5.1
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = -1
Query: 276 VNSSSCAGSVVPKVINASKYSADNGDDTTFFFLSSSLQNFAENLVIAEDKAFESILRTGF 97
V+ ++ A P V N S NG +SSS N + D + ++ T +
Sbjct: 7 VDCNNTANGFKPFVGNVEVISLSNGQARVMNHVSSSCYNRTSRQMNPADVWYLNLTGTPY 66
Query: 96 FISNSVNSITV 64
+S+S N TV
Sbjct: 67 RLSDSANKFTV 77
>08_01_0002 -
20208-20594,21525-21671,21754-21917,22005-22162,
24533-24826,24916-25121,25216-25812,26366-27097
Length = 894
Score = 27.5 bits (58), Expect = 6.8
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Frame = -3
Query: 514 NPFVY*AGGCGSVIEVNFFKICIKYLDSVLLKFWVELI----VTLLDVYFV 374
+PF+ A G + ++ F C +L +LLKFWV+L+ VT VYF+
Sbjct: 735 SPFLVTANG---MFVIDLF--CTWFLGLLLLKFWVKLVHWTTVTPFLVYFI 780
>03_05_0294 + 22855503-22855946,22856346-22856399
Length = 165
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 188 NVVSSPLSAEYLLALITLGTTDPAHEELLTSLGI 289
NV SPLS L+L+ G ++L++ LG+
Sbjct: 45 NVAFSPLSLHVALSLVAAGAGGATRDQLVSLLGV 78
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 185 KNVVSSPLSAEYLLALITLGTTDPAHEELLTSLG 286
+NV SPLS L+L+ G ++L ++LG
Sbjct: 35 RNVAFSPLSLHVALSLVAAGAGGATRDQLASALG 68
>03_01_0085 +
690618-691012,691114-691193,691775-691959,692363-693320,
693391-693518,693951-694010,694113-694163,694704-694821,
694990-695915,695916-697707,697810-697943,698029-698526
Length = 1774
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = -1
Query: 348 IDFNFDDTAENDERIVSSSVIPRLVNSSSCAGSVVPKVINASKYSADNGDDT 193
+D + D E+D+ + + R VN + V P + S S NGD T
Sbjct: 639 VDSHMDPDYESDDEFGNKKAVERSVNWARSDPFVSPVKVKYSNSSQKNGDAT 690
>07_01_0731 - 5566878-5567513
Length = 211
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 407 LDPKLKKDAVEVFDADFEKVDFDNG 481
LD D VE+ DADFE FD+G
Sbjct: 95 LDYVYDDDDVELVDADFEDGSFDDG 119
>02_05_0997 +
33382756-33382861,33383070-33383161,33383936-33384175,
33384820-33384900,33384974-33385113,33385462-33385622,
33385700-33385800,33385895-33385969,33386218-33386488,
33386657-33386697,33386922-33387004,33387100-33387189,
33387721-33387825,33388023-33388161,33388467-33388670,
33388837-33388908,33389189-33389273,33389374-33389480
Length = 730
Score = 27.1 bits (57), Expect = 8.9
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +2
Query: 86 LEIKNPVLSMDSKALSSAITKFSAKFCNELDKKKNVVSSPLSAEYLLALITLGT-TDPA- 259
+E+ LSM +K SSA+ F+ KF + L S+E + GT T PA
Sbjct: 238 VEVVRSSLSMMAKQWSSAMNLFNEKF-SALPSLIAAHGMESSSEDEFMSLLFGTRTSPAL 296
Query: 260 HEELLTSLG 286
H+ L++SLG
Sbjct: 297 HQFLVSSLG 305
>01_01_0061 +
483116-483757,483891-484046,484171-484262,484410-485076
Length = 518
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = -1
Query: 378 LLATLNVTPFIDFNFDDTAENDERIVSSSVIPRLVNSSSCAGSVVPKVINASKYSADNGD 199
+LA+ V NF+D ER + S +S + SV+P++ + + AD
Sbjct: 143 ILASPRVIKPTTLNFEDRTPVKERPPAPSPARSTASSLRKSSSVLPRITRSKSFVADRAP 202
Query: 198 D 196
D
Sbjct: 203 D 203
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,889,028
Number of Sequences: 37544
Number of extensions: 210353
Number of successful extensions: 508
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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