Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30210
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26066| Best HMM Match : RNA_pol_delta (HMM E-Value=3.1)             29   2.3  
SB_31556| Best HMM Match : rve (HMM E-Value=4.7e-30)                   28   4.0  
SB_53814| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)                   27   6.9  
SB_28488| Best HMM Match : PAX (HMM E-Value=0)                         27   6.9  
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  

>SB_26066| Best HMM Match : RNA_pol_delta (HMM E-Value=3.1)
          Length = 240

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 23/70 (32%), Positives = 31/70 (44%)
 Frame = -1

Query: 318 NDERIVSSSVIPRLVNSSSCAGSVVPKVINASKYSADNGDDTTFFFLSSSLQNFAENLVI 139
           ND+   S+ V+  L+  SS  G V P  I+         DD T    S S     E+   
Sbjct: 26  NDDPDTSAEVVIHLLGRSS-GGDVDPTRISILNQGLLADDDFTVIAESWSEIQSKESTAS 84

Query: 138 AEDKAFESIL 109
            ED+AFE +L
Sbjct: 85  TEDRAFELLL 94


>SB_31556| Best HMM Match : rve (HMM E-Value=4.7e-30)
          Length = 322

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 7  LFFERIEKLKIQIKILVYFYSNTI 78
          LF E+I +LK+Q KIL +   NTI
Sbjct: 13 LFLEKITELKLQTKILSFADENTI 36


>SB_53814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1301

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -1

Query: 336 FDDTAENDERIVSSSVIPRLVNSSSCAGSVVPKVINASKYSADNGDDTTF 187
           F D+ E  E   SS V P +    S  GSV+P  ++ + +   N D   F
Sbjct: 230 FSDSDEEFESFQSSEVQPDMHAVKSSNGSVLPVNLSPNNFHVSNVDGDDF 279


>SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)
          Length = 1287

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 180 KRRMLYHRHCQQNTCWR 230
           K RM + + CQ+N CWR
Sbjct: 561 KARMFWAQCCQKNACWR 577


>SB_28488| Best HMM Match : PAX (HMM E-Value=0)
          Length = 551

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -1

Query: 363 NVTPFIDFNFDDTAENDERIVSSSVIPRLVNSSSCAGSVVPKVINASK 220
           NVTP I+   D+    +  + S  V  RLV  + C+   VP +   S+
Sbjct: 83  NVTPEIEEKIDEYRRENPGMFSWEVRDRLVKDNVCSRCTVPSLAAISQ 130


>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1711

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 398 DYELDPKLKKDAVEVFDADFEKVDFDNGAAAAGL 499
           DY++D KL  DA +  D +FE++  +N    A L
Sbjct: 373 DYQVDYKLLLDAKKKLDTEFEELSKNNSEREAVL 406


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,807,091
Number of Sequences: 59808
Number of extensions: 249777
Number of successful extensions: 626
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)