Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30210
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26390.1 68415.m03167 serpin, putative / serine protease inhi...    38   0.003
At2g46915.1 68415.m05859 expressed protein  and genscan                31   0.35 
At5g16690.1 68418.m01954 origin recognition complex subunit 3-re...    30   1.1  
At1g74890.1 68414.m08681 two-component responsive regulator / re...    29   2.5  
At1g38380.1 68414.m04694 hypothetical protein                          29   2.5  
At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein ...    27   5.7  
At3g56640.1 68416.m06298 exocyst complex subunit Sec15-like fami...    27   7.5  
At1g67540.1 68414.m07695 expressed protein ; expression supporte...    27   7.5  
At1g51170.1 68414.m05754 protein kinase family protein                 27   7.5  
At5g05940.1 68418.m00657 expressed protein contains Pfam profile...    27   9.9  
At3g47550.4 68416.m05172 zinc finger (C3HC4-type RING finger) fa...    27   9.9  
At3g47550.1 68416.m05171 zinc finger (C3HC4-type RING finger) fa...    27   9.9  
At1g69280.1 68414.m07943 expressed protein                             27   9.9  

>At2g26390.1 68415.m03167 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 389

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 26/95 (27%), Positives = 41/95 (43%)
 Frame = +2

Query: 188 NVVSSPLSAEYLLALITLGTTDPAHEELLTSLGITDDDTIRXXXXXXXXXXXXIKGVTFN 367
           NVV SP+S   LL+LI  G+     EE+L+ L     D +                +  +
Sbjct: 31  NVVFSPMSINVLLSLIAAGSNPVTKEEILSFLMSPSTDHLNAVLAKIADGGTERSDLCLS 90

Query: 368 VANKIYIKEGDYELDPKLKKDAVEVFDADFEKVDF 472
            A+ ++I +  Y L P  K+     + A   +VDF
Sbjct: 91  TAHGVWIDKSSY-LKPSFKELLENSYKASCSQVDF 124


>At2g46915.1 68415.m05859 expressed protein  and genscan
          Length = 708

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 26/91 (28%), Positives = 41/91 (45%)
 Frame = -1

Query: 333 DDTAENDERIVSSSVIPRLVNSSSCAGSVVPKVINASKYSADNGDDTTFFFLSSSLQNFA 154
           DD +E +E I SS  +PR    +     +V  ++     S D GD   F  LSS L    
Sbjct: 86  DDDSEEEEGI-SSIHVPREKYINVSKSDLVNGIVTKLLDSQDGGDADIFLLLSSCL---- 140

Query: 153 ENLVIAEDKAFESILRTGFFISNSVNSITVK 61
           ++++ AE K     +R  F  + S+    +K
Sbjct: 141 DSILHAEHKRILEQMRADFVATQSLEEEELK 171


>At5g16690.1 68418.m01954 origin recognition complex subunit
           3-related / ORC3-related low similarity to SP|Q9UBD5
           Origin recognition complex subunit 3 (Origin recognition
           complex subunit Latheo) {Homo sapiens}
          Length = 556

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
 Frame = -1

Query: 342 FNFDDTAENDERIVS---SSVIPRLVNSSSCAGSVVPKVINASKYSADNGDDTTFFFLSS 172
           FN  DTAEND R  S   +  +  +V S     S  PK+   S+  +   +D  FF  S+
Sbjct: 19  FNSSDTAENDIRASSGNHNGKLTGIVKSKRRIESPSPKIAKRSEVESVEEEDGQFF--ST 76

Query: 171 SLQNFAENLVIAEDKAFESILR 106
                 E +    +K  E +LR
Sbjct: 77  LRFKVFETVWSKIEKTIEDVLR 98


>At1g74890.1 68414.m08681 two-component responsive regulator /
           response regulator 15 (ARR15) identical to response
           regulator 15 GI:11870065 from [Arabidopsis thaliana];
           contains Pfam profile: PF00072 response regulator
           receiver domain
          Length = 206

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = -1

Query: 315 DERIVSSSVIPRLVNSSSCAGSVVPKVINASKYSADNGDDTTFFFLSSSLQNFAENLVIA 136
           D+  V   VI RL+  S+C  + V     A +Y   +GD+      SS L++   NL++ 
Sbjct: 24  DDSFVDRKVIERLLKISACKVTTVESGTRALQYLGLDGDNG-----SSGLKDLKVNLIVT 78

Query: 135 E 133
           +
Sbjct: 79  D 79


>At1g38380.1 68414.m04694 hypothetical protein
          Length = 378

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 1   VTLFFERIEKLKIQIKILVYFYSNTIYTIGNKEPCSQYGF 120
           V +++    KL +Q   L++F     Y++  +E C  YGF
Sbjct: 97  VRVYYVNDRKLNVQEGALIFFVRGVRYSLPLRELCDIYGF 136


>At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein
           contains Pfam PF00096: Zinc finger, C2H2 type
          Length = 812

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 20/69 (28%), Positives = 29/69 (42%)
 Frame = -1

Query: 333 DDTAENDERIVSSSVIPRLVNSSSCAGSVVPKVINASKYSADNGDDTTFFFLSSSLQNFA 154
           +D+ +N      SS  P+   SS        KV++  +  ADN  DT     SS      
Sbjct: 655 EDSKDNGRSAAQSSSQPKESQSSKKNKGKAVKVVDPKETLADNFMDTVRRLQSSQNPQEE 714

Query: 153 ENLVIAEDK 127
           E   I++DK
Sbjct: 715 EEEAISKDK 723


>At3g56640.1 68416.m06298 exocyst complex subunit Sec15-like family
           protein  contains Pfam profile PF04091: Exocyst complex
           subunit Sec15-like
          Length = 789

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 475 IEVNFFKICIKYLDSVLLKFWVELIVTLLDVYFVG 371
           +  NFF +  KYLD +L+    E+I+  +    +G
Sbjct: 492 VNTNFFSVLRKYLDKILIDVLNEVILETISNNSIG 526


>At1g67540.1 68414.m07695 expressed protein ; expression supported
           by MPSS
          Length = 232

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 173 LDKKKNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGITDD 298
           + KKKN+ S  L   +   +  +  T P H   L  L + DD
Sbjct: 13  MKKKKNLSSWLLRKLFEFVIFFVSMTSPFHRHFLAVLSVADD 54


>At1g51170.1 68414.m05754 protein kinase family protein
          Length = 404

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +3

Query: 381 YTSRRVTMSSTQNLRRTLSRYLMQILKKLTSITEPQP 491
           +  + V  SS  +LRR  +R+ +QIL++L+  T P P
Sbjct: 52  FALKLVDKSSASSLRR--ARWEIQILRRLSDDTNPNP 86


>At5g05940.1 68418.m00657 expressed protein contains Pfam profile
           PF03759: Domain of unknown function (DUF315)
          Length = 611

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 18/72 (25%), Positives = 34/72 (47%)
 Frame = -1

Query: 273 NSSSCAGSVVPKVINASKYSADNGDDTTFFFLSSSLQNFAENLVIAEDKAFESILRTGFF 94
           N  SC G V+ + + + K+SA++  D      S  +     N V A    +   ++T   
Sbjct: 315 NGRSCLGDVIYRYVTSDKFSAESLLD-CLDLSSEHIALDIANRVEASIYVWRRRVQTKLG 373

Query: 93  ISNSVNSITVKI 58
           ++N+ +S T K+
Sbjct: 374 VNNNTSSTTPKL 385


>At3g47550.4 68416.m05172 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 232

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = -1

Query: 351 FIDFNFDDTAENDERIVSSSVIPRLVNSSSCAGSVVPKVINASKYSADNGDDTTFFFLSS 172
           F++ ++D+ +EN+    S +   R       A  ++   +N +    D  D T FF + S
Sbjct: 164 FLEADYDEYSENNS---SGAAFCRSAALILMALLLLRDALNLTTNPDDEDDPTAFFSVCS 220

Query: 171 SLQNFAENL 145
           SL  F  +L
Sbjct: 221 SLLTFTTSL 229


>At3g47550.1 68416.m05171 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 232

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = -1

Query: 351 FIDFNFDDTAENDERIVSSSVIPRLVNSSSCAGSVVPKVINASKYSADNGDDTTFFFLSS 172
           F++ ++D+ +EN+    S +   R       A  ++   +N +    D  D T FF + S
Sbjct: 164 FLEADYDEYSENNS---SGAAFCRSAALILMALLLLRDALNLTTNPDDEDDPTAFFSVCS 220

Query: 171 SLQNFAENL 145
           SL  F  +L
Sbjct: 221 SLLTFTTSL 229


>At1g69280.1 68414.m07943 expressed protein
          Length = 400

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -1

Query: 345 DFNFDDTAENDERIVSSSVIPRLVNSSSCAGSVVPKVINAS 223
           + +FD +  N E    SS +  L  SS   GS V  V NAS
Sbjct: 95  NLSFDSSLHNKELFSLSSKLFELQGSSDTPGSQVSGVTNAS 135


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,871,579
Number of Sequences: 28952
Number of extensions: 183255
Number of successful extensions: 529
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)