Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30206
         (369 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   1.6  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    26   2.1  
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy...    25   3.7  
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    24   6.5  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    24   6.5  
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc...    24   8.6  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
 Frame = +2

Query: 119 HYCDCWC----KPGLIRDSIAHKCVKECPK 196
           HY  CWC    KP  +++ + H C   C K
Sbjct: 256 HYL-CWCGKQEKPEFVKNLVPHSCGDPCGK 284


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 14/46 (30%), Positives = 18/46 (39%)
 Frame = +2

Query: 8   RHEGINSAECPPDQYDPGPNCAFETICALRSAHSNRKHYCDCWCKP 145
           R+E I     P D +    N +      L S  +N  H CD   KP
Sbjct: 273 RNEQIKQQYMPADNFGSNDNHSHNKKRRLSSLSTNNNHLCDNCHKP 318


>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 20  INSAECPPDQYDPGPN 67
           I+SAEC  ++  PGPN
Sbjct: 337 IDSAECDAEEPSPGPN 352


>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 50  YDPGPNCAFETICALRSAHSNRKH 121
           Y  GP+  F T C ++  H+ ++H
Sbjct: 46  YFYGPSIDFPTTCKIKQVHTLQRH 69


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +3

Query: 222  IIPISLLFGRIDDVIFYVK 278
            I  + L+FG+ D++++YVK
Sbjct: 1715 ISSLMLIFGKQDNILYYVK 1733


>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
           Pho4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 463

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +2

Query: 44  DQYDPGPNCAFETICALRSAHSNRKH 121
           + Y  GP  +F   CA++  H  ++H
Sbjct: 44  EPYFNGPTTSFPESCAIKQVHLLQRH 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,524,026
Number of Sequences: 5004
Number of extensions: 27308
Number of successful extensions: 50
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)