Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30206
(369 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0) 33 0.096
SB_12383| Best HMM Match : EGF_CA (HMM E-Value=2.5e-12) 30 0.51
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_56410| Best HMM Match : CXCXC (HMM E-Value=0.014) 29 1.6
SB_23241| Best HMM Match : EGF_CA (HMM E-Value=6.3e-30) 27 3.6
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.6
SB_31924| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00073) 27 4.8
SB_5573| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_44575| Best HMM Match : DUF444 (HMM E-Value=0.84) 27 6.3
SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_33595| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_28793| Best HMM Match : Furin-like (HMM E-Value=2.6) 27 6.3
SB_30137| Best HMM Match : Phosphodiest (HMM E-Value=0) 27 6.3
SB_22773| Best HMM Match : Ribosomal_L13 (HMM E-Value=7.5) 27 6.3
SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05) 26 8.3
SB_32260| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.3
SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.3
>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
Length = 960
Score = 32.7 bits (71), Expect = 0.096
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = +2
Query: 14 EGINSAECPPDQYDPGPNCAFETICALRSAHSNRKHYCDC 133
EG ECP Y G NC++ CA S R CDC
Sbjct: 263 EGYCKEECPRGIY--GRNCSYTCQCAYNQTCSKRDGLCDC 300
>SB_12383| Best HMM Match : EGF_CA (HMM E-Value=2.5e-12)
Length = 228
Score = 30.3 bits (65), Expect = 0.51
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 68 CAFETICALRSAHSNRKHYCDCWCKPGLIRDSIAHKCVKEC 190
C C + + +N +C CKPGL+ D + KC +C
Sbjct: 136 CDTSNPCHVNATCTNTVGSYECSCKPGLVGDGL--KCADDC 174
>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 28.7 bits (61), Expect = 1.6
Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 1/87 (1%)
Frame = +2
Query: 17 GINSAECPPDQYDPGPNCAFETICALRSAHSNRKHYCDCW-CKPGLIRDSIAHKCVKECP 193
G+ +EC +Y G C C + DC C PG + H CV ECP
Sbjct: 947 GVCESECSKGRYKSGDACK---PCHVSCNACRGPAKGDCLRCNPGHVY--FKHTCVTECP 1001
Query: 194 KYDEILD*LHNSDLITVRAYR*CNFLC 274
+ + D SD R R C+ C
Sbjct: 1002 EGTFVDD----SDGADARRCRPCHAAC 1024
>SB_56410| Best HMM Match : CXCXC (HMM E-Value=0.014)
Length = 272
Score = 28.7 bits (61), Expect = 1.6
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Frame = +2
Query: 77 ETICALRSAHSN--RKHY----CDCWCKPGLIRDSIAHKCVKECPKYDEILD*LHNSDLI 238
E C ++S H + R++Y C C CK + +KC KE P Y+ + N D+
Sbjct: 207 EEACRIKSHHCDPIRQYYDERTCSCKCKANYTYFKLGYKCGKE-PDYEFT---VRNCDIH 262
Query: 239 TVRA 250
RA
Sbjct: 263 ATRA 266
>SB_23241| Best HMM Match : EGF_CA (HMM E-Value=6.3e-30)
Length = 200
Score = 27.5 bits (58), Expect = 3.6
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 7/58 (12%)
Frame = +2
Query: 17 GINSAECPPDQYDPGPNCAFETICALRSAHSNRKHYCD-------CWCKPGLIRDSIA 169
G + C P G NCA C+LRS + ++ C C CK G D ++
Sbjct: 140 GSFACTCKPGYTGDGINCADIDECSLRSDNCHQDAICSNTAASFTCTCKQGFKGDGVS 197
>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2077
Score = 27.5 bits (58), Expect = 3.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 119 HYCDCWCKPGLIRDSIAHKCVKECPK 196
H C+ C PG D + ++C K CPK
Sbjct: 1766 HVCEKVCHPG-DPDHVEYECRKPCPK 1790
>SB_31924| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00073)
Length = 498
Score = 27.1 bits (57), Expect = 4.8
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 47 QYDPGPNCAFETIC-ALRSAHSNRKHYCDCWCK 142
Q+D N A +T+ A + +SNR H DC CK
Sbjct: 32 QWDKKENDADKTVRDAQKQQYSNRGHLIDCNCK 64
>SB_5573| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 155
Score = 27.1 bits (57), Expect = 4.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 60 VQIAPSRQSVHYEAHTQTGNTTVTAG 137
V + PSR+ + YE H GN + + G
Sbjct: 100 VFLGPSRREIRYEGHVTRGNKSSSMG 125
>SB_44575| Best HMM Match : DUF444 (HMM E-Value=0.84)
Length = 451
Score = 26.6 bits (56), Expect = 6.3
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +2
Query: 92 LRSAHSNRKHYCDCW 136
+R H N HYCD W
Sbjct: 366 MREKHGNIAHYCDLW 380
>SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1486
Score = 26.6 bits (56), Expect = 6.3
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 36 VHRTNTIRVQIAPSRQSVHYEAHTQTGNTTVT 131
VH + + + P + + ++H TGNTT T
Sbjct: 682 VHHSPDPKPPVLPDKSGIIQKSHNSTGNTTPT 713
>SB_33595| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 901
Score = 26.6 bits (56), Expect = 6.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 304 QINKAFIQDFT*KITSSIRPNSNEIGI 224
+IN+ + D T K T+S PN EIG+
Sbjct: 251 KINEGTLNDITTKETASGNPNVTEIGV 277
>SB_28793| Best HMM Match : Furin-like (HMM E-Value=2.6)
Length = 300
Score = 26.6 bits (56), Expect = 6.3
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 10/57 (17%)
Frame = +2
Query: 56 PGPNCAFETICALRSAHSNRKHYCDCWCKPGLIRDSIAHK----------CVKECPK 196
P C + S + + +CD C+PG + SI K CVKECPK
Sbjct: 165 PQKVCHVTNCLSCESVSYHGRRHCDT-CRPGYHKHSIHAKFGFGMIYDDVCVKECPK 220
>SB_30137| Best HMM Match : Phosphodiest (HMM E-Value=0)
Length = 655
Score = 26.6 bits (56), Expect = 6.3
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 36 VHRTNTIRVQIAPSRQSVHYEAHTQTGNTTVT 131
VH + + + P + + ++H TGNTT T
Sbjct: 584 VHHSPDPKPPVLPDKSGIIQKSHNSTGNTTPT 615
>SB_22773| Best HMM Match : Ribosomal_L13 (HMM E-Value=7.5)
Length = 135
Score = 26.6 bits (56), Expect = 6.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 267 FYVKS*INALLICLKKKKKNSR 332
+Y K N +L C+KKKKKN +
Sbjct: 46 YYKKILKNVILNCVKKKKKNKK 67
>SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)
Length = 1604
Score = 26.2 bits (55), Expect = 8.3
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = +2
Query: 170 HKCVKECPKYDEILD*LHNSDLITVRA 250
H+C+ CP++D ++D + + + I + A
Sbjct: 1566 HRCIGYCPQFDALIDEMTSEEHILLYA 1592
>SB_32260| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 26.2 bits (55), Expect = 8.3
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = +2
Query: 170 HKCVKECPKYDEILD*LHNSDLITVRA 250
H+C+ CP++D ++D + + + I + A
Sbjct: 10 HRCIGYCPQFDALIDEMTSEEHILLYA 36
>SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 848
Score = 26.2 bits (55), Expect = 8.3
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 92 LRSAHSNRKHYCDCWCKPGLIR 157
L+ +H ++K Y DCW K + +
Sbjct: 733 LKLSHQSQKSYYDCWVKEKIFK 754
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,843,049
Number of Sequences: 59808
Number of extensions: 228712
Number of successful extensions: 553
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -