Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30206
         (369 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09090.1 68416.m01069 defective in exine formation protein (D...    27   3.9  
At5g59400.2 68418.m07444 expressed protein predicted protein, Ar...    26   6.8  
At5g59400.1 68418.m07443 expressed protein predicted protein, Ar...    26   6.8  

>At3g09090.1 68416.m01069 defective in exine formation protein
           (DEX1) identical to defective in exine formation
           [Arabidopsis thaliana] gi|11138669|gb|AAG31444; contains
           Pfam domain PF01839: FG-GAP repeat
          Length = 896

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 9   GTRELTLRNVHRTNTIRVQIAPSRQSVHYEAHTQTGNTTVTAGAS 143
           G+RE   RNV      + +I+  +     + +T TGN++ T G S
Sbjct: 271 GSRENLNRNVTTNEVDQSKISGDKNETVIKLNTSTGNSSETLGTS 315


>At5g59400.2 68418.m07444 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 301

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = +2

Query: 62  PNCAFETICALRSAHSNRK-HYCDC 133
           PNC  E    +RS  SNR  H  DC
Sbjct: 231 PNCGEEVFAFVRSDQSNRSAHKADC 255


>At5g59400.1 68418.m07443 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 299

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = +2

Query: 62  PNCAFETICALRSAHSNRK-HYCDC 133
           PNC  E    +RS  SNR  H  DC
Sbjct: 231 PNCGEEVFAFVRSDQSNRSAHKADC 255


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,068,430
Number of Sequences: 28952
Number of extensions: 146601
Number of successful extensions: 307
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 487896136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)